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Putative Helicobacter pylori KH35 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,657,309 bp
GenBank #: PHLQ00000000 (NZ_PHLQ00000000)
REBASE acronym: HpyKH35
Org_num: 32013
All begin ORF_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
16 | 631 aa hypothetical protein U063_1207 | |||
17 | R | HpyKH27ORFLP (91% identity) | HpyKH35ORFAP | |
18 | M | M.HpyFD703ORF2305P (95% identity) | M.HpyKH35ORFAP | |
19 | S | S.HpyP009ORF4050P (98% identity) | S.HpyKH35ORFAP | |
20 | polyphosphate kinase 1 | |||
34 | hydroxyethylthiazole kinase | |||
35 | R | HpyUM067ORF6745P (91% identity) | HpyKH35ORFUP | |
38 | S | S.HpyME44ORF2510P (95% identity) | S.HpyKH35ORFUP | |
??? | M | M.HpyOK318ORFVP (92% identity) | M.HpyKH35ORFUP | |
42 | phosphatase PAP2 family protein | |||
309 | M48 family peptidase | |||
312 | R | HpyNP10ORF7570P (98% identity) | HpyKH35ORFGP | |
314 | M | M.HpyIN6ORF7590P (96% identity) | M.HpyKH35ORFGP | |
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
1 | M | M.HpyNP10II (100% identity) | ATTAAT | M.HpyKH35ORFVP |
2 | 264 aa hypothetical protein | |||
6 | 108 aa hypothetical protein | |||
7 | M | M.HpyKH41ORFA1P (100% identity) | M.HpyKH35ORFWP | |
8 | R | HpyKH41ORFA1P (100% identity) | HpyKH35ORFWP | |
10 | DNA cytosine methyltransferase | |||
8 | GIY-YIG nuclease family protein | |||
10 | M | M.HpyKH36ORFZP (99% identity) | M.HpyKH35ORFXP | |
11 | R | HpyKH36ORFZP (100% identity) | HpyKH35ORFXP | |
15 | 63 aa hypothetical protein | |||
13 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
15 | R | HpyNP10VIIP (99% identity) | GTNNAC | HpyKH35ORFIP |
16 | M | M.HpyT021XI (92% identity) | GTNNAC | M.HpyKH35ORFIP |
17 | ATP-dependent helicase | |||
16 | DNA topoisomerase subunit B | |||
??? | M | M.HpyKH27ORFUP (99% identity) | M.HpyKH35ORFTP | |
19 | R | HpyBG9VIIIP (97% identity) | HpyKH35ORFTP | |
21 | metalloendopeptidase like protein | |||
23 | -binding protein | |||
??? | RM | HpyIN6ORF2705P (93% identity) | HpyKH35ORFQP | |
30 | 485 aa hypothetical protein | |||
31 | DNA polymerase I | |||
32 | S | S.HpyBG5ORF7730P (44% identity) | S1.HpyKH35ORFMP | |
33 | S | S1.HpySW08ORF7425P (86% identity) | S2.HpyKH35ORFMP | |
34 | RM | HpyNP10ORF7465P (98% identity) | HpyKH35ORFMP | |
35 | ComF family protein | |||
36 | flagellar biosynthesis anti-sigma factor FlgM | |||
37 | M | M.HpyLI08XI (97% identity) | GCGC | M.HpyKH35ORFCP |
38 | 144 aa hypothetical protein HMPREF1427_00277 | |||
22 | Laminin subunit alpha-2 precursor | |||
??? | R | HpyKH36ORFYP (100% identity) | HpyKH35ORFA1P | |
??? | M | M.HpyNP10ORF1440P (99% identity) | M.HpyKH35ORFA1P | |
29 | 202 aa hypothetical protein HMPREF1397_00627 | |||
42 | cysteine-rich protein X | |||
??? | M | DNA -methyltransferase | M.HpyKH35ORFYP | |
46 | 69 aa hypothetical protein HMPREF1400_01478 | |||
47 | 75 aa hypothetical protein HMPREF1407_01483 | |||
48 | R | HpyNP10IVP (93% identity) | CCGG | HpyKH35ORFZP |
49 | M | M.HpyU418II (100% identity) | CCGG | M.HpyKH35ORFZP |
50 | 65 aa hypothetical protein | |||
52 | 59 aa hypothetical protein | |||
53 | M | M.HpyNP10I (99% identity) | CATG | M.HpyKH35ORFHP |
54 | HAD family hydrolase | |||
59 | alpha-1,2-fucosyltransferase | |||
60 | M | M.HpyKH41ORFCP (99% identity) | GATC | M.HpyKH35ORFEP |
61 | 331 aa hypothetical protein | |||
75 | YjgP/YjgQ family permease | |||
76 | M | M2.HpyLI41IV (99% identity) | CCATC | M1.HpyKH35ORFPP |
??? | M | M2.HpyUM037VI (100% identity) | CCATC | M2.HpyKH35ORFPP |
78 | R | HpyKH26ORFLP (100% identity) | CCATC | HpyKH35ORFPP |
79 | outer membrane protein | |||
102 | 179 aa hypothetical protein | |||
105 | RM | HpyNP10ORF7225BP (77% identity) | HpyKH35ORFRP | |
106 | 970 aa hypothetical protein | |||
125 | sodium/proline symporter | |||
126 | M | DNA -methyltransferase | M1.HpyKH35ORFJP | |
127 | M | M.HpyUM037ORF8285P (62% identity) | M2.HpyKH35ORFJP | |
128 | 97 aa hypothetical protein | |||
129 | R | HpyNP10ORF275P (77% identity) | HpyKH35ORFJP | |
130 | DNA cytosine methyltransferase | |||
129 | 325 aa hypothetical protein | |||
130 | M | M2.HpyKH41ORFIP (100% identity) | M2.HpyKH35ORFKP | |
131 | M | M1.HpyNP10V (100% identity) | CCTC | M1.HpyKH35ORFKP |
133 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
163 | S41 family peptidase | |||
??? | R | HpyMA25ORF6550P (97% identity) | HpyKH35ORFNP | |
166 | M | M.HpyKH41ORFPP (100% identity) | M.HpyKH35ORFNP | |
167 | 72 aa hypothetical protein HMPREF1410_01611 | |||
166 | site-specific DNA-methyltransferase | |||
??? | M | HpyKH36ORFTP (90% identity) | M.HpyKH35ORFOP | |
171 | carboxylating nicotinate-nucleotide diphosphorylase | |||
139 | 156 aa hypothetical protein HMPREF1411_00627 | |||
140 | M | M.Hpybs1ORFFP (86% identity) | M.HpyKH35ORFBP | |
141 | Translation elongation factor LepA | |||
281 | elongation factor Ts | |||
283 | R | HpyL024VIP (99% identity) | TGCA | HpyKH35ORFFP |
285 | M | M.HpyPO18V (97% identity) | TGCA | M.HpyKH35ORFFP |
286 | 67 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
105 | class I SAM-dependent DNA methyltransferase | |||
106 | R | HpyMM05ORF7200P (95% identity) | HpyKH35ORFSP | |
109 | M | M.HpyGE3ORF7225P (95% identity) | M.HpyKH35ORFSP | |
110 | ATP-dependent DNA helicase | |||
182 | DNA-binding response regulator | |||
??? | M | M.HpyKH27ORFWP (98% identity) | M.HpyKH35ORFLP | |
185 | R | HpyKH36ORFVP (99% identity) | HpyKH35ORFLP | |
187 | rod shape-determining MreC family protein | |||
202 | DNA/RNA non-specific endonuclease | |||
203 | M | M.HpyGRE039XII (96% identity) | M.HpyKH35ORFDP | |
204 | R | HpySP101ORF6735P (92% identity) | HpyKH35ORFDP |