Helicobacter pylori KH7 |
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Putative Helicobacter pylori KH7 RM systems
Ref: Shetty,V. et al. unpublished
REBASE ref # 26577
Contig set: 1,612,917 bp
GenBank #: PHMR00000000 (NZ_PHMR00000000)
REBASE acronym: HpyKH7
Org_num: 31727
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 40 | phosphatase PAP2 family protein | |||
| 42 | M | M.HpyIN9ORF2265P (100% identity) | M.HpyKH7ORFRP | |
| 43 | S | S.HpyIN9ORF2265P (100% identity) | S.HpyKH7ORFRP | |
| 44 | R | HpyIN9ORF2265P (100% identity) | HpyKH7ORFRP | |
| 47 | hydroxyethylthiazole kinase | |||
| 259 | M48 family peptidase | |||
| 261 | R | HpyIN9ORF7325P (98% identity) | HpyKH7ORFFP | |
| 262 | M | M.HpyIN9ORF7325P (100% identity) | M.HpyKH7ORFFP | |
| 263 | 128 aa unknown | |||
| 264 | 143 aa unknown | |||
| 265 | 67 aa hypothetical protein | |||
| 266 | S | S.HpyIN9ORF7325P (100% identity) | S.HpyKH7ORFFP | |
| 267 | glutamine--fructose-6-phosphate transaminase | |||
| 289 | polyphosphate kinase 1 | |||
| 290 | S | S.HpyIN9ORF1985P (100% identity) | S.HpyKH7ORFMP | |
| 291 | type I restriction endonuclease subunit R | |||
| 290 | restriction endonuclease subunit S | |||
| 291 | R | HpyKH3ORFMP (90% identity) | HpyKH7ORFNP | |
| 292 | 126 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1 | M | M.HpyIN9II (100% identity) | ATTAAT | M.HpyKH7ORFZP |
| 2 | modification methylase VspI domain protein | |||
| 5 | 108 aa hypothetical protein | |||
| ??? | M | M.HpyIN9ORF2080P (100% identity) | M.HpyKH7ORFA1P | |
| 9 | R | HpyNAB47ORFZP (100% identity) | HpyKH7ORFA1P | |
| 11 | DNA cytosine methyltransferase | |||
| 9 | GIY-YIG nuclease family protein | |||
| 11 | M | M.HpyIN9ORF2090P (94% identity) | M.HpyKH7ORFB1P | |
| ??? | R | HpyIN9ORF2090P (87% identity) | HpyKH7ORFB1P | |
| 16 | catalase family peroxidase | |||
| 7 | ATP-dependent helicase | |||
| 9 | M | M.HpyIN9ORF3065P (93% identity) | GTNNAC | M.HpyKH7ORFGP |
| 10 | R | HpyIN9ORF3065P (100% identity) | GTNNAC | HpyKH7ORFGP |
| 11 | 5NPY_A Chain A, Crystal structure of Helicobacter pylori flagellar hook protein FlgE2 | |||
| 15 | alpha-1,2-fucosyltransferase | |||
| 16 | M | M.HpyIN9VII (100% identity) | M.HpyKH7ORFEP | |
| 17 | R | HpyIN9VIIP (100% identity) | HpyKH7ORFEP | |
| 18 | 2H1Y_A Chain A, Crystal Structure Of Malonyl-coa:acyl Carrier Protein Transacylase From Helicobacter Pylori | |||
| 19 | DNA topoisomerase subunit B | |||
| 21 | M | M.HpyKH45ORFJP (97% identity) | M.HpyKH7ORFCP | |
| 22 | R | HpyIN9ORF3270P (94% identity) | HpyKH7ORFCP | |
| 23 | metalloendopeptidase like protein | |||
| 19 | 68 aa hypothetical protein | |||
| 20 | M | M.HpyKH17ORFLP (100% identity) | M.HpyKH7ORFYP | |
| 21 | DNA-cytosine methyltransferase | |||
| 22 | R | R1.HpyIN9ORF860P (100% identity) | R1.HpyKH7ORFYP | |
| 23 | R | R2.HpyKH45ORFVP (100% identity) | R2.HpyKH7ORFYP | |
| 24 | pseudaminic acid synthase | |||
| 36 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 37 | M | M.HpyIN9X (98% identity) | M.HpyKH7ORFAP | |
| 38 | 144 aa hypothetical protein HMPREF1427_00277 | |||
| ??? | hypothetical protein | |||
| 28 | M | M2.HpyIN9VI (95% identity) | GAAGA | M1.HpyKH7ORFUP |
| 29 | M | M1.HpyKH2ORFXP (99% identity) | GAAGA | M2.HpyKH7ORFUP |
| 30 | R | HpyIN9VIP (98% identity) | GAAGA | HpyKH7ORFUP |
| 31 | DNA-binding response regulator | |||
| 42 | carboxylating nicotinate-nucleotide diphosphorylase | |||
| 43 | M | HpyIN9ORF6510P (58% identity) | M.HpyKH7ORFSP | |
| 44 | RM | adenine specific DNA methyltransferase | HpyKH7ORFSAP | |
| 46 | RM | DNA methyltransferase | HpyKH7ORFSBP | |
| 47 | S41 family peptidase | |||
| 54 | exodeoxyribonuclease VII large subunit | |||
| 55 | M | M.HpyIN9VIII (98% identity) | TCGA | M.HpyKH7ORFOP |
| 56 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 58 | 99 aa hypothetical protein | |||
| 59 | RM | HpyIN9ORF4100P (67% identity) | HpyKH7ORFWBP | |
| 61 | RM | HpyIN9ORF4100P (32% identity) | HpyKH7ORFWAP | |
| 63 | -binding protein | |||
| 56 | 204 aa hypothetical protein HMPREF1401_01153 | |||
| 57 | R | HpyIN9IVP (79% identity) | CCGG | HpyKH7ORFPP |
| 58 | M | M.HpyIN9IV (100% identity) | CCGG | M.HpyKH7ORFPP |
| 59 | chaperone protein ClpB | |||
| 83 | sodium/proline symporter | |||
| 85 | M | M2.HpyIN9VP (100% identity) | M2.HpyKH7ORFLP | |
| 87 | M | M1.HpyIN9V (100% identity) | CCTC | M1.HpyKH7ORFLP |
| 89 | 2CMU_A Chain A, Crystal Structure Of A Putative Peptidyl-arginine Deiminase | |||
| 84 | HAD family hydrolase | |||
| 85 | M | M.HpyKH31ORFHP (96% identity) | M.HpyKH7ORFDP | |
| 86 | IceA2 protein | |||
| 79 | Laminin subunit alpha-2 precursor | |||
| 81 | R | HpyNP13XIIP (100% identity) | TCNNGA | HpyKH7ORFBP |
| 82 | M | M.HpyIN9IX (100% identity) | TCNNGA | M.HpyKH7ORFBP |
| 83 | acetyl-CoA carboxylase biotin carboxylase subunit | |||
| 133 | cadmium-translocating P-type ATPase | |||
| 135 | M | M.HpyKH16ORFPP (99% identity) | M.HpyKH7ORFQP | |
| 136 | R | HpyIN9ORF2560P (100% identity) | HpyKH7ORFQP | |
| 137 | outer membrane beta-barrel protein HofF | |||
| 288 | 95 aa hypothetical protein | |||
| 289 | RM | HpyIN9XI (100% identity) | HpyKH7ORFKP | |
| 290 | 553 aa hypothetical protein HMPREF1411_00815 | |||
| 311 | outer membrane protein | |||
| ??? | R | HpyIN9IIIP (100% identity) | HpyKH7ORFIP | |
| 316 | M | M2.HpyIN9III (90% identity) | M1.HpyKH7ORFIP | |
| 317 | M | M1.HpyIN9III (100% identity) | CCATC | M2.HpyKH7ORFIP |
| 318 | YjgP/YjgQ family permease | |||
| 356 | ComF family protein | |||
| 358 | RM | HpyIN9ORF7005P (100% identity) | HpyKH7ORFHP | |
| 359 | S | S.HpyIN9ORF7005P (51% identity) | S1.HpyKH7ORFHP | |
| 361 | S | S.HpyIN9ORF7005P (43% identity) | S2.HpyKH7ORFHP | |
| 362 | DNA polymerase I | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3 | biotin synthase | |||
| 5 | R | HpyIN9ORF6655P (98% identity) | HpyKH7ORFVP | |
| 6 | M | M.HpyIN9ORF6655P (100% identity) | M.HpyKH7ORFVP | |
| 8 | DNA/RNA non-specific endonuclease | |||
| 23 | 67 aa hypothetical protein | |||
| 24 | R | HpyIN9ORF6585P (100% identity) | HpyKH7ORFTP | |
| ??? | M | M.HpyIN9ORF6585P (100% identity) | M.HpyKH7ORFTP | |
| 28 | restriction endonuclease subunit M | |||
| 37 | 73 aa hypothetical protein HMPREF1403_00513 | |||
| ??? | M | M.HpyIN9ORF3725P (100% identity) | M.HpyKH7ORFXP | |
| 40 | R | HpyIN9ORF3725P (100% identity) | HpyKH7ORFXP | |
| 41 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 282 | ATP-dependent DNA helicase | |||
| 283 | M | M.HpyIN9XII (100% identity) | M.HpyKH7ORFJP | |
| 285 | R | HpyIN9XIIP (100% identity) | HpyKH7ORFJP | |
| 288 | 95 aa hypothetical protein | |||