Salmonella enterica subsp. enterica serovar Typhimurium OLF-FSR1-STCopenhagen-56 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium OLF-FSR1-STCopenhagen-56 RM systems
Ref: Duceppe,M.-O. et al. unpublished
REBASE ref # 27136
Contig set: 4,843,134 bp
GenBank #: PYVB00000000 (NZ_PYVB00000000)
REBASE acronym: SenC56
Org_num: 31143
All begin C5I00_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 23555 | endoribonuclease SymE | |||
| 23560 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenC56ORF23565P |
| 23565 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.SenC56ORF23565P |
| 23570 | R | SenC52ORF23620P (100% identity) | GAGNNNNNNRTAYG | SenC56ORF23565P |
| 23575 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10425 | RusA family crossover junction | |||
| 10430 | M | M.StyUK1V (100% identity) | GATC | M.SenC56ORF10430P |
| 10435 | 174 aa hypothetical protein | |||
| 18205 | ribulose-phosphate 3-epimerase | |||
| 18210 | M | M.StyTDamP (100% identity) | GATC | M.SenC56DamP |
| 18215 | cell division protein DamX | |||
| 10175 | drug/metabolite exporter YedA | |||
| 10180 | V | V.StyUK1DcmP (100% identity) | V.SenC56DcmP | |
| 10185 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenC56DcmP |
| 10190 | phosphohydrolase | |||
| 17730 | Fis family transcriptional regulator | |||
| 17735 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenC56ORF17735P |
| 17740 | DUF2556 domain-containing protein | |||
| 24505 | 62 aa hypothetical protein | |||
| 24510 | M | M.StyUK1ORFAP (100% identity) | M.SenC56ORF24510P | |
| 24515 | 73 aa hypothetical protein | |||
| 23385 | 363 aa hypothetical protein | |||
| 23390 | RM | StyUK1IV (100% identity) | GATCAG | SenC56ORF23390P |
| 23395 | BREX system P-loop protein BrxC | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1585 | MFS transporter | |||
| 1590 | M | M.StyUK1I (100% identity) | CAGAG | M.SenC56ORF1590P |
| 1595 | R | StyUK1IP (99% identity) | CAGAG | SenC56ORF1590P |
| 1600 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 23570 | type I restriction-modification system | |||
| 23575 | R | StyUK1MrrP (100% identity) | SenC56MrrP | |
| 23580 | 95 aa hypothetical protein | |||