Escherichia coli SCEC020001 |
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Putative Escherichia coli SCEC020001 RM systems
Ref: Liu,L. et al. unpublished
REBASE ref # 25198
| Sequence length: | GenBank #: | |
| Chromosome: | 4,908,742 bp | CP032426 |
| plasmid pOXA1_020001: | 88,392 bp | CP032425 |
REBASE acronym: Eco20001
Org_num: 31231
All begin C7V21_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5610 | 65 aa hypothetical protein | |||
| 5615 | R | EcoCS18FORF2130P (100% identity) | Eco20001ORF5620P | |
| 5620 | M | M.EcosEC2ORF410P (100% identity) | M.Eco20001ORF5620P | |
| ??? | S | S.EcosC41ORF22705P (100% identity) | S.Eco20001ORF5620P | |
| 5630 | 540 aa hypothetical protein | |||
| 7450 | IS1 family transposase | |||
| 7455 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | Eco20001ORF7465P |
| 7460 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.Eco20001ORF7465P |
| 7465 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.Eco20001ORF7465P |
| 7470 | IS3 family transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3000 | protein DamX | |||
| 3005 | M | DNA adenine methylase | GATC | M.Eco20001DamP |
| 3010 | ribulose-phosphate 3-epimerase | |||
| 3640 | DUF2556 domain-containing protein | |||
| 3645 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco20001ORF3645P |
| 3650 | Fis family transcriptional regulator | |||
| 11275 | phosphohydrolase | |||
| 11280 | M | M.SflSTLE1DcmP (100% identity) | CCWGG | M.Eco20001DcmP |
| 11285 | V | V.SflFF64DcmP (100% identity) | V.Eco20001DcmP | |
| 11290 | EamA family transporter | |||
| plasmid pOXA1_020001 | ||||
| 775 | 73 aa hypothetical protein | |||
| 780 | M | M.KpnVA569ORF28145P (100% identity) | M.Eco20001ORF780P | |
| 785 | 0 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15415 | isocitrate dehydrogenase | |||
| 15420 | R | EcosEC27McrCP (100% identity) | Eco20001McrCP | |
| 15425 | R | EcoteDMcrBP (100% identity) | Eco20001McrBP | |
| 15430 | recombinase family protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17045 | replication endonuclease | |||
| 17050 | M | M.Sen663ORF16605P (100% identity) | GATC | M.Eco20001ORF17050P |
| 17055 | TraR/DksA family transcriptional regulator | |||