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Putative Clostridioides difficile DSM 29629 RM systems
Ref: Riedel,T. et al. Int. J. Med. Microbiol. 307 (6), 311-320 (2017)
REBASE ref # 27454
Complete sequence: 4,111,235 bp
GenBank #: CP016104
REBASE acronym: Cdi29629
Org_num: 31010
All begin CDIF29629_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
3149 | 687 aa hypothetical protein | |||
3150 | R | Cdi3ORFAP (100% identity) | CANNNNNNNTAAAG | Cdi29629ORF3155P |
3151 | 142 aa hypothetical protein | |||
3152 | DNA polymerase subunit beta | |||
3153 | 102 aa hypothetical protein | |||
3154 | S | S.Cdi3ORFAP (100% identity) | CANNNNNNNTAAAG | S.Cdi29629ORF3155P |
3155 | M | M.Cdi3ORFAP (100% identity) | CANNNNNNNTAAAG | M.Cdi29629ORF3155P |
3156 | tagatose-bisphosphate aldolase | |||
3236 | 83 aa hypothetical protein | |||
3237 | R | Cdi3ORFDP (100% identity) | Cdi29629ORF3241P | |
3239 | S | S.Cdi3ORFDP (82% identity) | S.Cdi29629ORF3241P | |
3240 | 35 aa hypothetical protein | |||
3241 | M | M.Cdi28669ORF3210P (100% identity) | M.Cdi29629ORF3241P | |
3244 | C | C.Cdi3ORFDP (100% identity) | C.Cdi29629ORF3241P | |
3245 | 78 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
2891 | phospholipase | |||
2892 | M | M.CdiRSS3ORF14215P (100% identity) | CAAAAA | M.Cdi29629ORF2892P |
2893 | badm/rrf2 family transcriptional regulator | |||
3245 | 78 aa hypothetical protein | |||
3246 | M | M.Cdi28669ORF3215P (100% identity) | M.Cdi29629ORF3246P | |
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
2187 | sigma-54-dependent transcriptional regulator | |||
2188 | R | PdiBJ08McrCP (100% identity) | Cdi29629McrCP | |
2189 | R | Cdi3McrBP (100% identity) | Cdi29629McrBP | |
2190 | cell division protein FtsZ |