Escherichia coli UK_Dog_Liverpool |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli UK_Dog_Liverpool RM systems
Ref: Phan,H.T.T. et al. unpublished
REBASE ref # 27383
| Sequence length: | GenBank #: | |
| Chromosome: | 4,869,482 bp | CP031653 |
| plasmid pCARB35_01: | 89,643 bp | CP031654 |
| plasmid pCARB35_02: | 89,335 bp | CP031655 |
| plasmid pCARB35_03: | 59,142 bp | CP031656 |
REBASE acronym: EcoUKD
Org_num: 30718
All begin DL545_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6645 | IS1 family transposase | |||
| 6650 | R | Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | EcoUKDORF6660P |
| 6655 | S | S.Sen12509ORF5865P (100% identity) | ACAYNNNNCTG | S.EcoUKDORF6660P |
| 6660 | M | M.SenS688ORF13495P (100% identity) | ACAYNNNNCTG | M.EcoUKDORF6660P |
| 6665 | IS3 family transposase | |||
| 15315 | transcription factor | |||
| 15320 | M | M.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | M.EcoUKDORF15320P |
| 15325 | S | S.EcosE2ORF13465P (100% identity) | YTCANNNNNNGTTY | S.EcoUKDORF15320P |
| 15330 | DUF4433 domain-containing protein | |||
| 15335 | Appr-1-p processing protein | |||
| 15340 | R | Sbo49812IP (100% identity) | YTCANNNNNNGTTY | EcoUKDORF15320P |
| 15345 | M48 family peptidase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1420 | 0 aa hypothetical protein | |||
| 1425 | M | M.KpnVA569ORF28145P (100% identity) | M.EcoUKDORF1425P | |
| 1430 | 73 aa hypothetical protein | |||
| 2640 | protein DamX | |||
| 2645 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoUKDDamP |
| 2650 | ribulose-phosphate 3-epimerase | |||
| 3295 | DUF2556 domain-containing protein | |||
| 3300 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.EcoUKDORF3300P |
| 3305 | Fis family transcriptional regulator | |||
| 6685 | DUF4102 domain-containing protein | |||
| 6690 | M | M.Ecoi64ORF2425P (100% identity) | M.EcoUKDORF6690P | |
| 6695 | AAA family ATPase | |||
| 6810 | 67 aa hypothetical protein | |||
| 6815 | M | M.EcoUKDORF19850P (100% identity) | M.EcoUKDORF6815P | |
| 6820 | lysis protein S | |||
| 10475 | phosphohydrolase | |||
| 10480 | M | M.EcosEC5DcmP (100% identity) | CCWGG | M.EcoUKDDcmP |
| 10485 | V | V.EcosEC7DcmP (100% identity) | V.EcoUKDDcmP | |
| 10490 | drug/metabolite exporter YedA | |||
| 19845 | lysis protein S | |||
| 19850 | M | M.EcoUKDORF6815P (100% identity) | M.EcoUKDORF19850P | |
| 19855 | TrmB family transcriptional regulator | |||
| 19890 | LexA family transcriptional regulator | |||
| 19895 | M | M.KpnHs33ORF24645P (100% identity) | GATC | M.EcoUKDORF19895P |
| 19900 | PerC family transcriptional regulator | |||
| plasmid pCARB35_01 | ||||
| 25690 | 63 aa hypothetical protein | |||
| 25705 | M | M.EcoST410ORF24990P (100% identity) | M.EcoUKDORF25705P | |
| 25710 | recombination-associated protein RdgC | |||
| plasmid pCARB35_02 | ||||
| 26165 | 73 aa hypothetical protein | |||
| 26170 | M | M.SenST46ORF25580P (100% identity) | M.EcoUKDORF26170P | |
| 26175 | 59 aa hypothetical protein | |||
| plasmid pCARB35_03 | ||||
| 26405 | 0 aa hypothetical protein | |||
| 26410 | M | M.Ssp14523ORF22990P (100% identity) | M.EcoUKDORF26410P | |
| 26415 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 14575 | isocitrate dehydrogenase | |||
| 14580 | R | EcosEC27McrCP (100% identity) | EcoUKDMcrCP | |
| 14585 | R | EcoteDMcrBP (100% identity) | EcoUKDMcrBP | |
| 14590 | recombinase family protein | |||