Escherichia coli SP-65 Combo |
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Putative Escherichia coli SP-65 Combo RM systems
Ref: Xu,A. and Johnson,J. unpublished
REBASE ref # 27075
Contig set: 3,910,694 bp
GenBank #: POSW00000000 (NZ_POSW00000000)
REBASE acronym: EcoSP65
Org_num: 30234
All begin C1N95_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 13450 | endoribonuclease SymE | |||
| 13455 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoSP65ORF13460P |
| 13460 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.EcoSP65ORF13460P |
| 13465 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoSP65ORF13460P |
| 13470 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20155 | M | DNA (cytosine-5-)-methyltransferase | M.EcoSP65DcmP | |
| 20160 | phosphohydrolase | |||
| 3655 | integrase | |||
| 3660 | M | M1.RorA14ORF2075P (41% identity) | M1.EcoSP65ORF3660P | |
| 3665 | M | M1.Cko10770II (99% identity) | M2.EcoSP65ORF3660P | |
| ??? | R | RorA14ORF2075P (100% identity) | EcoSP65ORF3660P | |
| 3675 | conjugal transfer TraD family protein | |||
| 15245 | 73 aa hypothetical protein | |||
| 15265 | M | M.SboBSORF1444P (100% identity) | A | M.EcoSP65ORF15265P |
| 15270 | TrmB family transcriptional regulator | |||
| 1985 | BREX system P-loop protein BrxC | |||
| 1990 | RM | Eco657ORF22735P (100% identity) | EcoSP65ORF1990P | |
| 1995 | ABC transporter ATP-binding protein | |||
| 9665 | 0 aa hypothetical protein | |||
| 9670 | M | M.SenNS015ORFEP (100% identity) | SAY | M.EcoSP65ORF9670P |
| 9675 | 73 aa hypothetical protein | |||
| 10245 | DUF2556 domain-containing protein | |||
| 10250 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoSP65ORF10250P |
| 10255 | DUF4102 domain-containing protein | |||
| 5035 | replication endonuclease | |||
| 5040 | M | M.EcoKE46ORF14585P (100% identity) | GATC | M.EcoSP65ORF5040P |
| 5045 | 75 aa hypothetical protein | |||
| 3225 | cell division protein DamX | |||
| 3230 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoSP65DamP |
| 3235 | ribulose-phosphate 3-epimerase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3325 | damage-inducible protein DinI | |||
| 3330 | R | EspFAAGmrSDP (100% identity) | EcoSP65GmrSDP | |
| 3335 | 41 aa hypothetical protein | |||
| 13465 | type I restriction-modification system | |||
| 13470 | R | EcosS1MrrP (100% identity) | EcoSP65MrrP | |
| 13475 | GTP-binding protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15445 | NinE family protein | |||
| 15450 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoSP65ORF15450P |
| 15455 | recombination protein NinB | |||