Escherichia coli SP-13 |
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Putative Escherichia coli SP-13 RM systems
Ref: Xu,A. et al. unpublished
REBASE ref # 27075
Contig set: 5,161,278 bp
GenBank #: PNYD00000000 (NZ_PNYD00000000)
REBASE acronym: EcoSP13
Org_num: 30232
All begin CYD32_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1755 | endoribonuclease SymE | |||
| 1760 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoSP13ORF1765P |
| 1765 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.EcoSP13ORF1765P |
| 1770 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoSP13ORF1765P |
| 1775 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 27210 | LexA family transcriptional regulator | |||
| 27215 | M | phage N-6-adenine-methyltransferase | M.EcoSP13ORF27215P | |
| 25610 | ribosome-associated inhibitor A | |||
| 25615 | M | M.Ecor024ORF22975P (100% identity) | M.EcoSP13ORF25615P | |
| 25620 | Com family DNA-binding transcriptional | |||
| 26000 | TrmB family transcriptional regulator | |||
| 26005 | M | M.SboBSORF1444P (100% identity) | A | M.EcoSP13ORF26005P |
| 26025 | 73 aa hypothetical protein | |||
| 20810 | DUF2556 domain-containing protein | |||
| 20815 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoSP13ORF20815P |
| 20820 | Fis family transcriptional regulator | |||
| 3250 | phosphohydrolase | |||
| 3255 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoSP13DcmP |
| 3260 | V | V.SflC32DcmP (74% identity) | V.EcoSP13DcmP | |
| 3265 | drug/metabolite exporter YedA | |||
| 23380 | 64 aa hypothetical protein | |||
| 23385 | M | M.EcoSP15ORF1857P (100% identity) | M.EcoSP13ORF23385P | |
| 23390 | PerC family transcriptional regulator | |||
| 14265 | cell division protein DamX | |||
| 14270 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoSP13DamP |
| 14275 | ribulose-phosphate 3-epimerase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21950 | 41 aa hypothetical protein | |||
| 21955 | R | EspFAAGmrSDP (100% identity) | EcoSP13GmrSDP | |
| 21960 | damage-inducible protein DinI | |||
| 1770 | type I restriction-modification system | |||
| 1775 | R | EcosS1MrrP (99% identity) | EcoSP13MrrP | |
| 1780 | GTPase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 18520 | recombination protein NinB | |||
| 18525 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoSP13ORF18525P |
| 18530 | NinE family protein | |||