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Putative Pasteurellaceae bacterium 12565 RM systems
Ref: Beker,M. et al. Front. Microbiol. (2018) In press
REBASE ref # 26794
Complete sequence: 2,630,016 bp
GenBank #: CP026856
REBASE acronym: Pba12565
Org_num: 29674
All begin C4O86_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
1930 | bifunctional glutamate--cysteine ligase | |||
1935 | S | S1.MhaS37ORF1156P (88% identity) | S1.Pba12565ORF1955P | |
1940 | integrase | |||
1945 | S | S2.Mha63ORFNP (46% identity) | S2.Pba12565ORF1955P | |
1950 | transcriptional regulator | |||
1955 | M | M.Mhas183ORF2125P (100% identity) | M.Pba12565ORF1955P | |
1960 | R | Mhas184ORF1970P (100% identity) | Pba12565ORF1955P | |
1965 | phosphatidylserine decarboxylase | |||
4830 | bifunctional [glutamate--ammonia | |||
4835 | R | MhaMH060ORF527P (100% identity) | Pba12565ORF4845P | |
4840 | S | S.PhaAI (100% identity) | S.Pba12565ORF4845P | |
4845 | M | M.Mhas183ORF4955P (89% identity) | M.Pba12565ORF4845P | |
4850 | 125 aa hypothetical protein | |||
10240 | restriction endonuclease subunit S | |||
10245 | S | S1.Mhas184ORF2820P (100% identity) | CAACNNNNNTC | S.Pba12565ORF10250P |
10250 | M | M.Mhas184ORF2820P (100% identity) | CAACNNNNNTC | M.Pba12565ORF10250P |
10255 | methionine synthase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
3605 | 3-dehydroquinate synthase | |||
3610 | M | M.Mhas183ORF3810P (100% identity) | GATC | M.Pba12565ORF3610P |
3615 | sodium-dependent transporter | |||
4285 | 235 aa hypothetical protein | |||
4290 | M | M.Mhas183ORF4540P (100% identity) | M.Pba12565ORF4290P | |
4295 | 348 aa hypothetical protein | |||
4965 | replication protein | |||
4970 | M | M.Mhas183ORF5140P (100% identity) | M.Pba12565ORF4970P | |
4975 | DUF968 domain-containing protein | |||
6595 | DUF4224 domain-containing protein | |||
6600 | M | M.Mhas183ORF5005P (100% identity) | M.Pba12565ORF6600P | |
6605 | 280 aa hypothetical protein | |||
6600 | class I SAM-dependent methyltransferase | |||
6605 | M | M.Mhas183ORF5010P (100% identity) | M.Pba12565ORF6605P | |
6610 | Com family DNA-binding transcriptional | |||
7075 | 71 aa hypothetical protein | |||
7080 | M | M.Mhas183ORF7295P (100% identity) | M.Pba12565ORF7080P | |
7085 | DNA helicase | |||
8735 | protein-transmembrane prediction | |||
8740 | R | Mhas183ORF9065P (100% identity) | GCATC | Pba12565ORF8745P |
8745 | M | M.Mhas183ORF9065P (100% identity) | GCATC | M.Pba12565ORF8745P |
8750 | TIGR03752 family integrating conjugative element | |||
10365 | S6 family igA-specific metalloendopeptidase | |||
10370 | M | M.Mhas184ORF4105P (100% identity) | M.Pba12565ORF10370P | |
10375 | adhesin | |||
12110 | 188 aa hypothetical protein | |||
12115 | M | M.MhaS37ORF1791P (100% identity) | CTGAAG | M.Pba12565ORF12115P |
12120 | RM | 0 aa hypothetical protein | Pba12565ORF12115P | |
12125 | helicase IV | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
5505 | citrate synthase | |||
5510 | R | Mhas183ORF6680P (100% identity) | Pba12565ORF5515P | |
??? | M | M.MhaD174ORFAP (100% identity) | M.Pba12565ORF5515P | |
5525 | trimethylamine-N-oxide reductase TorA | |||
6745 | DNA topoisomerase (ATP-hydrolyzing) subunit B | |||
6750 | R | Mhas183ORF5480P (100% identity) | GTTAAT | Pba12565ORF6755P |
6755 | M | M.Mhas184ORF7415P (100% identity) | GTTAAT | M.Pba12565ORF6755P |
6760 | 4-hydroxybenzoate octaprenyltransferase |