Escherichia coli ARS-CC5560 |
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Putative Escherichia coli ARS-CC5560 RM systems
Ref: Kim,S.-W. et al. unpublished
REBASE ref # 25612
Contig set: 5,287,118 bp
GenBank #: NFRA00000000 (NZ_NFRA00000000)
REBASE acronym: Eco5560
Org_num: 27187
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 718 | 82 aa hypothetical protein | |||
| 719 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco5560ORFGP |
| 722 | M | M.EcoPT54II (100% identity) | CACNNNNNNNCTGG | M.Eco5560ORFGP |
| 724 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco5560ORFGP |
| 726 | type I restriction-modification system deoxyribonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9 | 66 aa hypothetical protein EC990816_1660 | |||
| 10 | M | M.EcoNE92ORF14960P (100% identity) | M.Eco5560ORFEP | |
| 13 | 116 aa hypothetical protein CFI09_14245 | |||
| 12 | 101 aa hypothetical protein WKY_01100 | |||
| 14 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco5560ORFHP | |
| 17 | DNA methylase family protein, partial | |||
| 19 | prophage protein ninB | |||
| 22 | M | M.EcoC3108ORFMP (100% identity) | M.Eco5560ORFDP | |
| 27 | 64 aa hypothetical protein | |||
| 25 | 59 aa hypothetical protein SFxv_3614 | |||
| 26 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco5560ORFAP |
| 27 | tRNA-dihydrouridine synthase B | |||
| 31 | HD domain protein | |||
| 32 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco5560DcmP |
| 34 | V | V.EcoPT54DcmP (100% identity) | V.Eco5560DcmP | |
| 38 | YedA | |||
| 78 | 120 aa hypothetical protein SAMN04487773_1787 | |||
| 79 | R | Ecos32ORF15460P (100% identity) | Eco5560ORFCP | |
| 82 | M | M.Ecos32ORF15460P (100% identity) | M.Eco5560ORFCP | |
| 85 | 62 aa hypothetical protein | |||
| 106 | Tryptophan--tRNA ligase | |||
| 107 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco5560DamP |
| 110 | cell division protein DamX | |||
| 143 | 90 aa hypothetical protein | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.Eco5560ORFFP | |
| 150 | 116 aa hypothetical protein | |||
| 846 | 138 aa hypothetical protein | |||
| 847 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco5560ORFBP |
| 855 | DUF1998 domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 729 | 81 aa hypothetical protein Ec53638_1442 | |||
| 730 | R | EcoX21GmrDP (100% identity) | Eco5560GmrDP | |
| 731 | R | Ecos1613GmrSP (100% identity) | Eco5560GmrSP | |
| 732 | 61 aa hypothetical protein | |||