Escherichia coli YDC107 |
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Putative Escherichia coli YDC107 RM systems
Ref: Hazen,T.H. et al. unpublished
REBASE ref # 25524
| Sequence length: | GenBank #: | |
| Chromosome: | 5,198,311 bp | CP025707 |
| plasmid pYDC107_184: | 184,098 bp | CP025708 |
| plasmid pYDC107_70: | 70,372 bp | CP025710 |
| plasmid pYDC107_85: | 85,535 bp | CP025709 |
REBASE acronym: EcoYDC107
Org_num: 26911
All begin YDC107_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3100 | toxic protein SymE | |||
| 3101 | S | S.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | S.EcoYDC107ORF3102P |
| 3102 | M | M.EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | M.EcoYDC107ORF3102P |
| 3103 | R | EcosS1ORF16790P (99% identity) | CCANNNNNNNCTTC | EcoYDC107ORF3102P |
| 3104 | mrr restriction system protein | |||
| 3523 | 326 aa hypothetical protein | |||
| ??? | R | Sso8ORF17680P (99% identity) | AAAYNNNNNCTC | EcoYDC107ORF3527P |
| 3526 | S | S.EcosNDM5ORF17455P (100% identity) | AAAYNNNNNCTC | S.EcoYDC107ORF3527P |
| 3527 | M | M.Sso8ORF17680P (100% identity) | AAAYNNNNNCTC | M.EcoYDC107ORF3527P |
| 3528 | miro-like family protein | |||
| plasmid pYDC107_184 | ||||
| 5119 | transposase | |||
| 5120 | R | KpnKPH1ORF27575P (100% identity) | AAAYNNNNNCTC | EcoYDC107ORF5122P |
| 5121 | S | S.EcoS497ORF620P (68% identity) | AAAYNNNNNCTC | S.EcoYDC107ORF5122P |
| ??? | M | M.Ecos2020ORFGP (100% identity) | AAAYNNNNNCTC | M.EcoYDC107ORF5122P |
| 5123 | antitoxin phd | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 468 | 306 aa hypothetical protein | |||
| 467 | V | V.SflSTLE3DcmP (100% identity) | V.EcoYDC107DcmP | |
| 469 | M | M.SflSTLE3DcmP (100% identity) | CCWGG | M.EcoYDC107DcmP |
| 470 | HD domain protein | |||
| 1078 | perC transcriptional activator family protein | |||
| 1079 | M | M.SspPIBORF6330P (100% identity) | M.EcoYDC107ORF1079P | |
| 1080 | 64 aa hypothetical protein | |||
| 1926 | bacterial regulatory, Fis family protein | |||
| 1927 | M | M.EcosS1ORF18905P (100% identity) | ATGCAT | M.EcoYDC107ORF1927P |
| 1928 | 59 aa hypothetical protein | |||
| 2035 | ribulose-phosphate 3-epimerase | |||
| 2036 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoYDC107DamP |
| 2037 | protein DamX | |||
| 3145 | perC transcriptional activator family protein | |||
| 3146 | M | M.EcosA33ORF3820P (100% identity) | GATC | M.EcoYDC107ORF3146P |
| 3147 | lexA DNA binding domain protein | |||
| 4409 | 65 aa hypothetical protein | |||
| 4410 | M | M.EcoZ101ORF12285P (100% identity) | A | M.EcoYDC107ORF4410P |
| 4414 | 618 aa hypothetical protein | |||
| plasmid pYDC107_184 | ||||
| 5101 | 73 aa hypothetical protein | |||
| 5102 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoYDC107ORF5102P |
| 5103 | 308 aa hypothetical protein | |||
| plasmid pYDC107_70 | ||||
| 5239 | transposase IS66 family protein | |||
| 5240 | R | YpsR1ORFAP (99% identity) | CCWGG | EcoYDC107ORF5241P |
| 5241 | M | M.YpsR2ORFAP (100% identity) | CCWGG | M.EcoYDC107ORF5241P |
| 5242 | 68 aa hypothetical protein | |||
| plasmid pYDC107_85 | ||||
| 5165 | plasmid stability family protein | |||
| 5166 | M | M.Ssp14523ORF22990P (100% identity) | M.EcoYDC107ORF5166P | |
| 5167 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 3103 | 1169 aa hypothetical protein | |||
| 3104 | R | EcosS1MrrP (100% identity) | EcoYDC107MrrP | |
| 3105 | 318 aa hypothetical protein | |||