Escherichia coli ExPEC XM |
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Putative Escherichia coli ExPEC XM RM systems
Ref: Zhang,H. et al. unpublished
REBASE ref # 25488
| Sequence length: | GenBank #: | |
| Chromosome: | 5,146,765 bp | CP025328 |
| plasmid unnamed: | 286,854 bp | CP025329 |
REBASE acronym: EcoXM
Org_num: 26839
All begin CXG97_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 26150 | endoribonuclease SymE | |||
| 26155 | S | S.EcoPU1ORF23360P (100% identity) | CCANNNNNNNCTTC | S.EcoXMORF26160P |
| 26160 | M | M.Ecoppa1ORF6185P (100% identity) | CCANNNNNNNCTTC | M.EcoXMORF26160P |
| 26165 | R | EcosS1ORF16790P (100% identity) | CCANNNNNNNCTTC | EcoXMORF26160P |
| 26170 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2865 | PerC family transcriptional regulator | |||
| 2870 | M | M.EcosEC8ORF20220P (100% identity) | GATC | M.EcoXMORF2870P |
| 2875 | LexA family transcriptional regulator | |||
| 5065 | 75 aa hypothetical protein | |||
| 5070 | M | M.EcoPU1ORF18090P (100% identity) | GATC | M.EcoXMORF5070P |
| 5075 | replication endonuclease | |||
| 7760 | TrmB family transcriptional regulator | |||
| 7765 | M | M.SboBSORF1444P (100% identity) | A | M.EcoXMORF7765P |
| 7785 | 73 aa hypothetical protein | |||
| 11260 | drug/metabolite exporter YedA | |||
| 11265 | V | V.SflC32DcmP (74% identity) | V.EcoXMDcmP | |
| 11270 | M | M.EcoW224NDcmP (100% identity) | CCWGG | M.EcoXMDcmP |
| 11275 | phosphohydrolase | |||
| 14935 | PerC family transcriptional regulator | |||
| 14940 | M | M.Sdy9753ORFBP (100% identity) | M.EcoXMORF14940P | |
| 14945 | 64 aa hypothetical protein | |||
| 15790 | LexA family transcriptional regulator | |||
| 15795 | M | M.Ecoppa1ORF22275P (100% identity) | GATC | M.EcoXMORF15795P |
| 15800 | PerC family transcriptional regulator | |||
| 19605 | Fis family transcriptional regulator | |||
| 19610 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoXMORF19610P |
| 19615 | DUF2556 domain-containing protein | |||
| 20235 | ribulose-phosphate 3-epimerase | |||
| 20240 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoXMDamP |
| 20245 | cell division protein DamX | |||
| 26390 | PerC family transcriptional regulator | |||
| 26395 | M | M.SflN101ORF11410P (100% identity) | GATC | M.EcoXMORF26395P |
| 26400 | LexA family transcriptional regulator | |||
| plasmid unnamed | ||||
| 27780 | 59 aa hypothetical protein | |||
| 27785 | M | M.EcoY18JORF350P (100% identity) | M.EcoXMORF27785P | |
| 27790 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15585 | damage-inducible protein DinI | |||
| 15590 | R | EspFAAGmrSDP (100% identity) | EcoXMGmrSDP | |
| 15595 | 41 aa hypothetical protein | |||
| 26165 | type I restriction-modification system | |||
| 26170 | R | EcosS1MrrP (100% identity) | EcoXMMrrP | |
| 26175 | GTPase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6820 | recombination protein NinB | |||
| 6825 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoXMORF6825P |
| 6830 | NinE family protein | |||