Escherichia coli O55:H7 str. CB9615 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli O55:H7 str. CB9615 RM systems
Ref: Zhou,Z. et al. PLoS ONE 5 (1), E8700 (2010)
REBASE ref # 11600
| Sequence length: | GenBank #: | |
| Chromosome: | 5,386,352 bp | CP001846 (NC_013941) |
| plasmid pO55: | 66,001 bp | CP001847 (NC_013942) |
REBASE acronym: EcoCB9615
Org_num: 5863
All begin G2583_, G2583_pO
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5147 | HSP20-like domain protein | |||
| 5148 | S | S.EcoTB182AORF22480P (100% identity) | CACNNNNNNNCTGG | S.EcoCB9615ORF5149P |
| 5149 | M | M.EcoX21ORF4993P (100% identity) | CACNNNNNNNCTGG | M.EcoCB9615ORF5149P |
| 5150 | R | EcoTB182AORF22480P (100% identity) | CACNNNNNNNCTGG | EcoCB9615ORF5149P |
| 5151 | protein of unknown function DUF262 | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 2410 | Uncharacterized inner membrane transporter yedA | |||
| 2411 | V | V.EcosPA8DcmP (100% identity) | V.EcoCB9615DcmP | |
| 2412 | M | M.EcoTB182ADcmP (100% identity) | CCWGG | M.EcoCB9615DcmP |
| 2413 | metal-dependent phosphohydrolase | |||
| 3251 | NinE protein | |||
| 3252 | M | M.EcoTB182AORF20675P (100% identity) | GATC | M.EcoCB9615ORF304P |
| 3253 | 146 aa hypothetical protein | |||
| 3980 | DNA-binding protein fis | |||
| 3981 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoCB9615ORF3981P |
| 3982 | 59 aa hypothetical protein | |||
| 4083 | Ribulose-phosphate 3-epimerase | |||
| 4084 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoCB9615DamP |
| 4085 | Uncharacterized protein conserved in bacteria | |||
| 5105 | Helicase family protein | |||
| 5106 | RM | EcoC0147ORF20760P (100% identity) | GAAABCC | EcoCB9615ORF5106P |
| 5189 | 164 aa hypothetical protein | |||
| 5190 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoCB9615ORF5190P |
| 5191 | 108 aa hypothetical protein | |||
| plasmid pO55 | ||||
| 550155 | 41 aa hypothetical protein | |||
| 550159 | M | M.EcoTB182AORF25840P (100% identity) | M.EcoCB9615ORF550159P | |
| 550161 | 73 aa hypothetical protein O2R | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5145 | YjiS | |||
| 5146 | R | EcoC9702GmrDP (100% identity) | EcoCB9615GmrSDP | |
| 5147 | HSP20-like domain protein | |||