Escherichia coli O104:H4 FDAARGOS_348 |
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Putative Escherichia coli O104:H4 FDAARGOS_348 RM systems
Ref: Minogue,T. et al. unpublished
REBASE ref # 24773
| Sequence length: | GenBank #: | |
| Chromosome: | 5,256,950 bp | CP022086 |
| plasmid unnamed1: | 109,945 bp | CP022085 |
REBASE acronym: Eco348
Org_num: 25026
All begin CEQ26_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 25835 | endoribonuclease SymE | |||
| 25840 | S | S.SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | S.Eco348I |
| 25845 | M | M.SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | M.Eco348I |
| 25850 | R | SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | Eco348IP |
| 25860 | DUF262 domain-containing protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4095 | DUF1382 domain-containing protein | |||
| 4100 | M | M.Sso1099ORF735P (100% identity) | GATC | M.Eco348ORF4100P |
| 4105 | regulator | |||
| 4200 | 215 aa hypothetical protein | |||
| 4205 | R | Sso1099IP (100% identity) | CTGCAG | Eco348IIIP |
| 4210 | M | M.Sso1099I (100% identity) | CTGCAG | M.Eco348III |
| 4215 | LexA family transcriptional repressor | |||
| 6375 | TrmB family transcriptional regulator | |||
| 6380 | M | M.SsoL4094ORF17545P (100% identity) | A | M.Eco348ORF6380P |
| 6400 | 108 aa hypothetical protein | |||
| 10535 | LexA family transcriptional regulator | |||
| 10540 | M | M.Sso90ORF15820P (100% identity) | GATC | M.Eco348ORF10540P |
| 10545 | PerC family transcriptional regulator | |||
| 11155 | drug/metabolite exporter YedA | |||
| 11160 | V | V.SsoSE61DcmP (100% identity) | CCWGG | V.Eco348DcmP |
| 11165 | M | M.SsoSE61DcmP (100% identity) | CCWGG | M.Eco348Dcm |
| 11170 | phosphohydrolase | |||
| 18840 | Fis family transcriptional regulator | |||
| 18845 | M | M.EcotcmA3ORF12410P (100% identity) | ATGCAT | M.Eco348ORF18845P |
| 18850 | DUF2556 domain-containing protein | |||
| 19430 | ribulose-phosphate 3-epimerase | |||
| 19435 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco348DamP |
| 19440 | cell division protein DamX | |||
| plasmid unnamed1 | ||||
| 515 | 76 aa hypothetical protein | |||
| 520 | M | M.Sso8361ORFCP (100% identity) | M.Eco348ORF520P | |
| 525 | 269 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 16765 | serine protease | |||
| 16770 | M | M.Kpn0718ORF815P (100% identity) | ACCACC | M.Eco348II |
| 16775 | R | Kpn0718ORF815P (100% identity) | ACCACC | Eco348IIP |
| 16780 | 97 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 25820 | DUF1127 domain-containing protein | |||
| 25825 | R | SflLIN8GmrSDP (34% identity) | Eco348GmrSP | |
| ??? | R | EcoM1887GmrSDP (65% identity) | Eco348GmrDP | |
| 25835 | endoribonuclease SymE | |||