Xylella fastidiosa subsp. pauca 11399 |
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Putative Xylella fastidiosa subsp. pauca 11399 RM systems
Ref: Niza,B. and de Souza,A. unpublished
REBASE ref # 22892
Contig set: 2,736,060 bp
GenBank #: JNBT00000000 (NZ_JNBT00000000)
REBASE acronym: Xfa11399
Org_num: 21400
All begin AA93_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 11630 | S | S.XfaXf32ORF12315P (50% identity) | S1.Xfa11399ORF11635P | |
| 11635 | M | M.Xfa12ORF12570P (100% identity) | M.Xfa11399ORF11635P | |
| 11640 | pseudogene | |||
| 11645 | DEAD/DEAH box helicase | |||
| ??? | S | restriction modification system DNA specificity subunit | S2.Xfa11399ORF11635P | |
| 11650 | pseudogene | |||
| 11655 | M | M.Xfa12ORF12595P (100% identity) | M.Xfa11399ORF11655P | |
| 11660 | threonine transporter RhtB | |||
| 11640 | pseudogene | |||
| 11645 | R | Xfa12ORF12595P (100% identity) | Xfa11399ORF11645P | |
| ??? | restriction modification system DNA specificity subunit | |||
| 11695 | 66 aa hypothetical protein | |||
| 11700 | R | Xfa12ORF12655P (100% identity) | Xfa11399ORF11715P | |
| 11705 | 206 aa hypothetical protein | |||
| ??? | S | S.XfaORF2742P (100% identity) | S.Xfa11399ORF11715P | |
| 11715 | M | M.Xfa4ORF11395P (100% identity) | M.Xfa11399ORF11715P | |
| 11720 | 84 aa hypothetical protein | |||
| 1255 | metal-dependent hydrolase | |||
| ??? | R | Xfa12ORF1280P (100% identity) | Xfa11399ORF1285P | |
| 1275 | pseudogene | |||
| ??? | S | M.Xfa3124ORF12650P (58% identity) | S.Xfa11399ORF1285P | |
| 1285 | M | N-6 DNA methylase | M.Xfa11399ORF1285P | |
| 1295 | 68 aa hypothetical protein | |||
| 11615 | pseudogene | |||
| 11620 | R | Xfa12ORF12570P (100% identity) | Xfa11399ORF11620P | |
| 11625 | S | restriction endonuclease subunit S | S.Xfa11399ORF11620P | |
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9850 | pseudogene | |||
| 9855 | M | M.Xfa12ORF3505P (99% identity) | M.Xfa11399ORF9855P | |
| 9860 | peptidase | |||
| 3970 | 83 aa hypothetical protein | |||
| 3975 | M | M.XfaXf6cORF10320P (100% identity) | M.Xfa11399ORF3975P | |
| 3980 | R | Xfa12ORF6790P (100% identity) | Xfa11399ORF3975P | |
| 3985 | competence protein | |||
| 7510 | 185 aa hypothetical protein | |||
| ??? | M | M.XfaXf6cORF6085P (100% identity) | M.Xfa11399ORF7515P | |
| 7520 | pseudogene | |||
| 7665 | 190 aa hypothetical protein | |||
| 7670 | M | M.XfaXf6cORF5915P (94% identity) | GCATGC | M.Xfa11399ORF7670P |
| 7675 | pseudogene | |||
| 9780 | 470 aa hypothetical protein | |||
| 9785 | M | M.Xfa12ORF3575P (100% identity) | M.Xfa11399ORF9785P | |
| 9790 | phosphotyrosine protein phosphatase | |||
| 2670 | 80 aa hypothetical protein | |||
| 2675 | R | XfaY3CORF8005P (100% identity) | CGTACG | Xfa11399ORF2680P |
| 2680 | M | M.XfaXf6cORF2780P (100% identity) | CGTACG | M.Xfa11399ORF2680P |
| 2690 | peptidylprolyl isomerase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 8360 | M | M.XfaXf6cORF5105P (30% identity) | M.Xfa11399ORF8360P | |
| 8365 | 3-oxoacyl-ACP synthase | |||
| 8340 | alpha/beta hydrolase | |||
| 8345 | R | Xfa12ORF9975P (100% identity) | Xfa11399ORF8345P | |
| 8350 | 94 aa hypothetical protein | |||