Escherichia coli RiKo 2305/09 |
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Putative Escherichia coli RiKo 2305/09 RM systems
Ref: Leimbach,A. et al. unpublished
REBASE ref # 22656
Contig set: 4,806,931 bp
GenBank #: JYPB00000000 (NZ_JYPB00000000)
REBASE acronym: Eco2305
Org_num: 20897
All begin RIKO2305_103c, RIKO2305_108c, RIKO2305_122c, RIKO2305_24c, RIKO2305_32c, RIKO2305_35c, RIKO2305_46c, RIKO2305_50c, RIKO2305_53c, RIKO2305_97c
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 320 | repB plasmid partitioning protein | |||
| 330 | M | M.SenS688ORF13495P (100% identity) | M.Eco2305ORF330P | |
| 340 | S | S.Sen12509ORF5865P (100% identity) | S.Eco2305ORF330P | |
| 350 | R | Sen12509ORF5865P (100% identity) | Eco2305ORF330P | |
| 360 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10 | phage lysis protein | |||
| 20 | M | DNA adenine methyltransferase, SAM-dependent | M.Eco2305ORF20P | |
| 70 | CPS-53 (KpLE1) prophage protein | |||
| 80 | M | M.KpnHs33ORF24645P (100% identity) | GATC | M.Eco2305ORF80P |
| 90 | RecA-mediated autopeptidase | |||
| 90 | amino acid exporter for phenylalanine, | |||
| 100 | V | V.EcosEC7DcmP (100% identity) | CCWGG | V.Eco2305DcmP |
| 110 | M | M.EcosEC5DcmP (100% identity) | CCWGG | M.Eco2305DcmP |
| 120 | HD superfamily phosphohydrolase | |||
| 150 | 73 aa hypothetical protein | |||
| 160 | M | M.KpnVA569ORF28145P (100% identity) | M.Eco2305ORF160P | |
| 170 | 308 aa hypothetical protein | |||
| 470 | D-ribulose-5-phosphate 3-epimerase | |||
| 480 | M | DNA adenine methyltransferase | GATC | M.Eco2305DamP |
| 490 | cell division protein that binds to the septal | |||
| 1100 | global DNA-binding transcriptional dual | |||
| 1110 | M | M.Ssp28760ORF20045P (100% identity) | ATGCAT | M.Eco2305ORF1110P |
| 1120 | membrane protein | |||
| 3740 | 52 aa hypothetical protein | |||
| 3750 | M | M.KpnH93ORFAP (100% identity) | GATC | M.Eco2305ORF3750P |
| 3760 | 47 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| ??? | R | EcoteDMcrBP (92% identity) | Eco2305McrBP | |
| ??? | R | EmaE2C08McrCP (100% identity) | Eco2305McrCP | |
| 30 | NADP-dependent isocitrate dehydrogenase | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 350 | replication gene A protein (GpA) | |||
| 360 | M | M.Sen663ORF16605P (100% identity) | GATC | M.Eco2305ORF360P |
| 370 | TraR/DksA family transcriptional regulator | |||