Escherichia coli S88 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli S88 RM systems
Ref: Genoscope -,C.E.A. unpublished
REBASE ref # 10128
Complete sequence: 5,032,268 bp
GenBank #: CU928161 (NC_011742)
REBASE acronym: EcoS88
Org_num: 5272
All begin ECS88_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4965 | 131 aa conserved hypothetical protein | |||
| 4966 | R | EcoJA65PIP (100% identity) | AGCANNNNNNTGA | EcoS88ORF4968P |
| 4967 | S | S.SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | S.EcoS88ORF4968P |
| 4968 | M | M.SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | M.EcoS88ORF4968P |
| 4969 | restriction protein (mrr-like) | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1178 | recombination protein ninB from phage origin | |||
| 1179 | M | M.EcoDi2ORF1390P (100% identity) | GATC | M.EcoS88ORF1179P |
| 1180 | 127 aa conserved hypothetical protein, putative protein | |||
| 1349 | 65 aa conserved hypothetical protein from phage | |||
| 1350 | M | M.SboBSORF1444P (100% identity) | M.EcoS88ORF1350P | |
| 1351 | 75 aa conserved hypothetical protein from phage origin | |||
| 2012 | 306 aa conserved hypothetical protein; putative inner | |||
| 2013 | V | V.SflC32DcmP (74% identity) | V.EcoS88DcmP | |
| 2014 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoS88DcmP |
| 2015 | metal-dependent phosphohydrolase | |||
| 2841 | bacteriophage replication gene A | |||
| 2842 | M | M.Eco477TORF26430P (82% identity) | GATC | M.EcoS88ORF2842P |
| 2843 | DksA/TraR protein family with a zinc | |||
| 2900 | regulatory protein; lexA-binding | |||
| 2901 | M | M.Eco043ORF2133P (98% identity) | GATC | M.EcoS88ORF2901P |
| 2902 | 164 aa conserved hypothetical protein; CPS-53 (KpLE1) | |||
| 3646 | global DNA-binding transcriptional dual | |||
| 3647 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoS88ORF3647P |
| 3648 | 59 aa conserved hypothetical protein; putative | |||
| 3771 | D-ribulose-5-phosphate 3-epimerase | |||
| 3772 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoS88DamP |
| 3773 | 428 aa conserved hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2859 | protein from DinI-like family | |||
| 2860 | R | EcoW224NGmrSDP (100% identity) | EcoS88GmrSDP | |
| 2861 | DNA-invertase from lambdoid prophage | |||