Escherichia coli UCD-JA37 |
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Putative Escherichia coli UCD-JA37 RM systems
Ref: Coil,D.A. et al. unpublished
REBASE ref # 21259
Contig set: 5,438,881 bp
GenBank #: LJYC00000000 (NZ_LJYC00000000)
REBASE acronym: EcoJA37
Org_num: 18049
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 701 | restriction endonuclease | |||
| 702 | R | Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | EcoJA37ORFAP |
| 709 | M | M.Ssp28760ORF3465P (100% identity) | TGANNNNNNNNTGCT | M.EcoJA37ORFAP |
| 713 | S | S.EcosBORF22035P (100% identity) | TGANNNNNNNNTGCT | S.EcoJA37ORFAP |
| 714 | endoribonuclease symE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 6 | recombination protein ninB from phage origin | |||
| 8 | M | M.Eco310ORFEP (100% identity) | GATC | M.EcoJA37ORFFP |
| 12 | 115 aa conserved hypothetical protein | |||
| 9 | 73 aa hypothetical protein | |||
| 11 | M | M.Xca80ORFEP (100% identity) | M.EcoJA37ORFEP | |
| 18 | 141 aa hypothetical protein | |||
| 10 | 97 aa hypothetical protein | |||
| 11 | R | Ecoi029ORF24395P (100% identity) | AAGCTT | EcoJA37ORFIP |
| 12 | M | M.SenSL26ORF25460P (100% identity) | AAGCTT | M.EcoJA37ORFIP |
| 13 | 60 aa hypothetical protein | |||
| 11 | hydrolase | |||
| 12 | M | M.SsoSE61DcmP (100% identity) | CCWGG | M.EcoJA37DcmP |
| 14 | V | V.Sdy49550DcmP (100% identity) | V.EcoJA37DcmP | |
| 18 | drug/metabolite exporter YedA | |||
| 20 | 73 aa hypothetical protein | |||
| 22 | M | M.Sso866ORF27155P (100% identity) | M.EcoJA37ORFGP | |
| 27 | Uncharacterised protein | |||
| 13 | 126 aa hypothetical protein, partial | |||
| 16 | M | M.UbapRSB107ORFAP (93% identity) | M.EcoJA37ORFHP | |
| 25 | membrane protein | |||
| 26 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoJA37ORFCP |
| 28 | DNA-binding protein fis | |||
| 166 | 112 aa hypothetical protein | |||
| 167 | M | M.EfeC18ORF5895P (98% identity) | GATC | M.EcoJA37ORFBP |
| 169 | 84 aa hypothetical protein | |||
| 273 | protein DamX | |||
| 276 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoJA37DamP |
| 278 | ribulose-phosphate 3-epimerase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2 | R | Sensp14178ORF9290P (22% identity) | EcoJA37ORFDP | |
| 3 | M | M.Sensp14178ORF9290P (100% identity) | M.EcoJA37ORFDP | |
| 4 | phage integrase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 700 | 216 aa hypothetical protein | |||
| 701 | R | Ssp28760MrrP (100% identity) | EcoJA37MrrP | |
| 702 | DEAD/DEAH box helicase family protein | |||
| 717 | 100 aa hypothetical protein Ec53638_1442 | |||
| 718 | R | EcoSTEC346McrBP (100% identity) | EcoJA37McrBP | |
| ??? | R | Ssp28760McrCP (100% identity) | EcoJA37McrCP | |
| 721 | 99 aa hypothetical protein | |||