Escherichia coli UCD-JA18 |
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Putative Escherichia coli UCD-JA18 RM systems
Ref: Coil,D.A. et al. unpublished
REBASE ref # 21259
Contig set: 5,469,186 bp
GenBank #: LJXY00000000 (NZ_LJXY00000000)
REBASE acronym: EcoJA18
Org_num: 18045
All begin ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 99 | 114 aa hypothetical protein ECJG_03568 | |||
| 100 | S | S.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | S.EcoJA18ORFAP |
| 102 | M | M.Ecos69ORF1130P (100% identity) | AACNNNNNNGTGC | M.EcoJA18ORFAP |
| 106 | R | Ecoo241ORF21620P (100% identity) | AACNNNNNNGTGC | EcoJA18ORFAP |
| 113 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5 | Uncharacterised protein | |||
| 8 | M | M.Sfl0030ORFCP (100% identity) | M.EcoJA18ORFGP | |
| 13 | 73 aa hypothetical protein | |||
| 24 | 146 aa hypothetical protein | |||
| 26 | M | M.Sbo2708ORFCP (100% identity) | GATC | M.EcoJA18ORFEP |
| 30 | protein ninX | |||
| 44 | 132 aa hypothetical protein | |||
| 47 | M | M.SsoL4094ORF17545P (100% identity) | A | M.EcoJA18ORFFP |
| 49 | ARAC-type regulatory protein, partial | |||
| 24 | membrane protein | |||
| 25 | M | M.Ecos69ORF20890P (100% identity) | ATGCAT | M.EcoJA18ORFCP |
| 27 | DNA-binding protein fis | |||
| 122 | 84 aa hypothetical protein | |||
| 123 | M | M.SspPIBORF6330P (99% identity) | GATC | M.EcoJA18ORFDP |
| 127 | 73 aa hypothetical protein | |||
| 723 | drug/metabolite exporter YedA | |||
| 724 | V | V.Sdy49550DcmP (100% identity) | V.EcoJA18DcmP | |
| 728 | M | M.SsoSE61DcmP (100% identity) | CCWGG | M.EcoJA18DcmP |
| 730 | hydrolase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 94 | 148 aa hypothetical protein | |||
| 95 | R | Msa17McrC2P (100% identity) | EcoJA18McrCP | |
| 96 | R | Msa17McrB2P (100% identity) | EcoJA18McrBP | |
| 97 | 100 aa hypothetical protein Ec53638_1442 | |||
| 106 | helicase | |||
| 113 | R | Ssp28760MrrP (100% identity) | EcoJA18MrrP | |
| 114 | 186 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 113 | ribulose-phosphate 3-epimerase | |||
| 114 | M | M.Ecos69DamP (100% identity) | GATC | M.EcoJA18ORFBP |
| 117 | protein DamX | |||