Salmonella enterica subsp. enterica serovar Agona 09.F.08 |
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Putative Salmonella enterica subsp. enterica serovar Agona 09.F.08 RM systems
Ref: Zhou,Z. et al. PLoS Genet. 9 (4), E1003471 (2013)
REBASE ref # 19162
Contig set: 4,716,149 bp
GenBank #: CATF00000000 (NZ_CATF00000000)
REBASE acronym: Sen09F08
Org_num: 16229
All begin SA09_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2196 | filamentation induced by cAMP protein Fic | |||
| 2197 | R | SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | Sen09F08ORF2199P |
| 2198 | S | S.SenSA4ORF5001P (100% identity) | CCCNNNNNRTAG | S.Sen09F08ORF2199P |
| 2199 | M | M2.SenSA5ORF17266P (99% identity) | CCCNNNNNRTAG | M2.Sen09F08ORF2199P |
| 2200 | M | M1.SenSA5ORF17266P (100% identity) | CCCNNNNNRTAG | M1.Sen09F08ORF2199P |
| 2201 | protein TIR | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4319 | 113 aa hypothetical protein | |||
| 4320 | M | M.SenSH7ORF6070P (100% identity) | GATC | M.Sen09F08ORF4320P |
| 4321 | bacteriophage replication gene A | |||
| 2985 | periplasmic protein | |||
| 2986 | M | DNA methylase | ATGCAT | M.Sen09F08ORF2986P |
| 2987 | DNA-binding protein Fis | |||
| 4322 | 62 aa hypothetical protein | |||
| 4323 | M | M.SenSH7ORF6090P (100% identity) | CGGCCG | M.Sen09F08ORF4323P |
| ??? | R | SenSH7ORF6090P (100% identity) | CGGCCG | Sen09F08ORF4323P |
| 4325 | pbsx family phage portal protein | |||
| 4603 | protein DamX | |||
| 4604 | M | DNA adenine methylase | GATC | M.Sen09F08DamP |
| 4605 | ribulose-phosphate 3-epimerase | |||
| 2215 | 670 aa hypothetical protein | |||
| 2216 | M | M.SenSA2ORF2906P (92% identity) | CAGCTG | M.Sen09F08ORF2216P |
| 2217 | 97 aa hypothetical protein | |||
| 2960 | carboxylate/amino acid/amine transporter | |||
| 2961 | V | very short patch repair protein | V.Sen09F08DcmP | |
| 2962 | M | M.SenSA5DcmP (100% identity) | CCWGG | M.Sen09F08DcmP |
| 2963 | metal dependent phosphohydrolase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 732 | major facilitator superfamily MFS_1 | |||
| 733 | M | M.StyTORF2507P (100% identity) | CAGAG | M.Sen09F08ORF733P |
| 734 | R | SenSA5ORF13013P (100% identity) | CAGAG | Sen09F08ORF733P |
| 735 | cyanide-insensitive oxidase CioA | |||