Escherichia coli Cp6salp3 |
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Putative Escherichia coli Cp6salp3 RM systems
Ref: Olsen,R.H. et al. Genome Announc 3 (3) (2015)
REBASE ref # 19688
Contig set: 5,095,283 bp
GenBank #: JYED00000000 (NZ_JYED00000000)
REBASE acronym: EcoCp6
Org_num: 15881
All begin TS82_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 12100 | endoribonuclease SymE | |||
| 12105 | R | EcoSF088ORF20515P (99% identity) | RTACNNNNGTG | EcoCp6ORF12115P |
| 12110 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoCp6ORF12115P |
| 12115 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoCp6ORF12115P |
| 12120 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 25785 | 162 aa hypothetical protein | |||
| 25790 | M | M.EcosA33ORF3820P (100% identity) | GATC | M.EcoCp6ORF25790P |
| 25795 | LexA family transcriptional regulator | |||
| 14550 | R | KpnDJORFGP (95% identity) | CCNGG | EcoCp6ORF14555P |
| 14555 | M | M.SflFF34ORF24420P (100% identity) | CCNGG | M.EcoCp6ORF14555P |
| 14565 | 77 aa hypothetical protein | |||
| 13845 | 75 aa hypothetical protein | |||
| 13865 | M | M.SboBSORF1444P (100% identity) | M.EcoCp6ORF13865P | |
| 13870 | TrmB family transcriptional regulator | |||
| 20895 | ATP-binding protein | |||
| 20900 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.EcoCp6ORF20900P |
| ??? | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoCp6ORF20900P |
| 20910 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoCp6ORF20900P |
| 20915 | restriction endonuclease | |||
| 1935 | 59 aa hypothetical protein | |||
| 1940 | M | M.EcoSCU318ORF17865P (98% identity) | ATGCAT | M.EcoCp6ORF1940P |
| 1945 | Fis family transcriptional regulator | |||
| 17865 | bacteriophage protein | |||
| 17870 | M | M.EcoPnTigORFFP (95% identity) | M.EcoCp6ORF17870P | |
| 17875 | 75 aa hypothetical protein | |||
| 25250 | phage protein | |||
| 25255 | M | M.EcoS1268ORF11970P (100% identity) | GTCGAC | M.EcoCp6ORF25255P |
| 25260 | R | EcosEC21ORF11865P (100% identity) | EcoCp6ORF25255P | |
| 25265 | bacteriophage protein | |||
| 6545 | hydrolase | |||
| 6550 | M | M.EcoXMDcmP (100% identity) | CCWGG | M.EcoCp6DcmP |
| 6555 | V | V.SflC32DcmP (74% identity) | V.EcoCp6DcmP | |
| 6560 | multidrug DMT transporter | |||
| 9015 | cell division protein DamX | |||
| 9020 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoCp6DamP |
| 9025 | ribulose-phosphate 3-epimerase | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20910 | restriction endonuclease | |||
| 20915 | R | EcosS9McrCP (100% identity) | EcoCp6McrCP | |
| 20920 | R | EcosS3McrBP (100% identity) | EcoCp6McrBP | |
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 15985 | P21 prophage-derived protein NinB | |||
| 15990 | M | M.EcosC25ORF16305P (100% identity) | GATC | M.EcoCp6ORF15990P |
| 15995 | protein ninE | |||