Helicobacter pylori 207/99 |
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Putative Helicobacter pylori 207/99 RM systems
Ref: Nunes,A. et al. Genome Announc 3 (1) (2015)
REBASE ref # 19061
Contig set: 1,544,379 bp
GenBank #: JSXU00000000 (NZ_JSXU00000000)
REBASE acronym: Hpy207
Org_num: 15054
All begin HPY207_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4905 | S | S.HpySP205ORF3825P (58% identity) | S.Hpy207ORF4905P | |
| 4155 | R | HpyAL6ORF2775P (96% identity) | Hpy207ORF4155P | |
| 4160 | hydroxyethylthiazole kinase | |||
| 285 | formyltetrahydrofolate deformylase | |||
| 290 | S | S.HpyC110XVI (68% identity) | S.Hpy207ORF290P | |
| 295 | 90 aa hypothetical protein | |||
| 3560 | 631 aa hypothetical protein | |||
| 3565 | R | HpyH021ORF2155P (91% identity) | Hpy207ORF3570P | |
| 3570 | M | M.HpyF020XVI (97% identity) | M.Hpy207ORF3570P | |
| 3575 | S | S.HpySP701X (99% identity) | S.Hpy207ORF3570P | |
| 1595 | membrane protein | |||
| 1600 | M | M.HpyI007ORF4130P (96% identity) | M.Hpy207ORF1600P | |
| 1605 | S | 177 aa hypothetical protein, partial | S.Hpy207ORF1600P | |
| 4445 | metal-dependent hydrolase | |||
| 4450 | R | HpySP311ORF6710P (95% identity) | Hpy207ORF4455P | |
| 4455 | M | M.HpyH016ORF7390P (96% identity) | M.Hpy207ORF4455P | |
| 4460 | S | S.HpyU003XV (97% identity) | S1.Hpy207ORF4455P | |
| 4465 | 61 aa hypothetical protein | |||
| 4470 | S | S.HpyPOR112ORF7595P (62% identity) | S2.Hpy207ORF4455P | |
| 4475 | cag pathogenicity island protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4860 | membrane protein | |||
| 4865 | M | M.HpyBGR6III (97% identity) | ATTAAT | M.Hpy207ORF4865P |
| 4870 | glycosyltransferase 9 family protein | |||
| 3590 | M | M.HpyNP02VII (99% identity) | GANTC | M.Hpy207ORF3590P |
| 3595 | R | HpyT005IXP (96% identity) | GANTC | Hpy207ORF3590P |
| 30 | membrane protein | |||
| 35 | R | Hpy015VIIIP (99% identity) | GTAC | Hpy207ORF40P |
| 40 | M | M.HpyJO3X (98% identity) | GTAC | M.Hpy207ORF40P |
| 45 | DNA gyrase subunit B | |||
| 4875 | GTP-binding protein | |||
| 4880 | M | M.HpyC61ORFMP (97% identity) | ACGT | M.Hpy207ORF4880P |
| 4885 | non-functional restriction endonuclease | |||
| 6755 | 67 aa hypothetical protein | |||
| 6760 | M | M.HpyPO02XIV (97% identity) | TGCA | M.Hpy207ORF6760P |
| 6765 | R | HpyF004VIIIP (98% identity) | TGCA | Hpy207ORF6760P |
| 6770 | cytochrome C | |||
| 1200 | glycerol-3-phosphate dehydrogenase | |||
| 1205 | RM | HpyME41ORF3245P (90% identity) | Hpy207ORF1205P | |
| 1210 | 452 aa hypothetical protein | |||
| 360 | UDP-N-acetylenolpyruvoylglucosamine reductase | |||
| ??? | R | HpyPO01IVP (95% identity) | GAATTC | Hpy207ORF370P |
| 370 | M | M.HpyID6X (99% identity) | GAATTC | M.Hpy207ORF370P |
| 375 | lipopolysaccharide 1,2-glucosyltransferase | |||
| 3705 | flagellar biosynthesis anti-sigma factor FlgM | |||
| 3710 | M | M.HpyPO102XI (97% identity) | GCGC | M.Hpy207ORF3710P |
| 3715 | 144 aa hypothetical protein | |||
| 5285 | hydrolase | |||
| 5290 | M | M.HpyI003I (98% identity) | CATG | M.Hpy207ORF5290P |
| 5295 | R | Hpy85373ORFAP (94% identity) | CATG | Hpy207ORF5290P |
| 5300 | serine acetyltransferase | |||
| 4045 | Laminin subunit alpha-2 precursor | |||
| 4050 | R | HpyNCI40VIIP (98% identity) | TCNNGA | Hpy207ORF4055P |
| 4055 | M | M.HpyGM7XIV (97% identity) | TCNNGA | M.Hpy207ORF4055P |
| 4060 | acetyl-CoA carboxylase | |||
| 5775 | exodeoxyribonuclease VII large subunit | |||
| 5780 | R | HpySP401ORF1660P (83% identity) | CCGG | Hpy207ORF5785P |
| 5785 | M | M.HpyU433III (99% identity) | CCGG | M.Hpy207ORF5785P |
| 5790 | chaperone protein ClpB | |||
| 4545 | DEAD/DEAH box helicase | |||
| 4550 | RM | HpySP18ORF6940P (77% identity) | Hpy207ORF4550P | |
| 4555 | 30 aa hypothetical protein | |||
| 5545 | flagellar hook protein FlgE | |||
| 5550 | R | HpyP007VIP (95% identity) | GTNNAC | Hpy207ORF5555P |
| 5555 | M | M.HpyCOL201ORF860P (97% identity) | GTNNAC | M.Hpy207ORF5555P |
| 5560 | ATP-dependent DNA helicase | |||
| 4630 | membrane protein | |||
| 4635 | R | HpySP413IVP (97% identity) | CCATC | Hpy207ORF4640P |
| 4640 | M | M1.HpyJO3IV (92% identity) | CCATC | M2.Hpy207ORF4640P |
| 4645 | M | M1.HpyISR10III (99% identity) | CCATC | M1.Hpy207ORF4640P |
| 4650 | permease | |||
| 4775 | amidophosphoribosyltransferase | |||
| 4780 | RM | Hpy5019ORF3175P (97% identity) | Hpy207ORF4780P | |
| 4785 | S | S.HpySP204ORF7020P (95% identity) | S.Hpy207ORF4780P | |
| 4790 | DNA polymerase I | |||
| 7285 | agmatine deiminase | |||
| 7290 | M | M1.Hpy015VII (98% identity) | CCTC | M1.Hpy207ORF7290P |
| 7295 | M | M2.HpyCOL120IVP (98% identity) | CCTC | M2.Hpy207ORF7290P |
| 7300 | proline:sodium symporter PutP | |||
| 6230 | GTP-binding protein LepA | |||
| 6235 | M | M.HpySP710ORF1725P (99% identity) | GCNGC | M.Hpy207ORF6235P |
| 6240 | 92 aa hypothetical protein, partial | |||
| 7485 | membrane protein | |||
| 7490 | M | M.Hpy397ORF1900P (97% identity) | GATC | M.Hpy207ORF7490P |
| 7495 | alpha-1,2-fucosyltransferase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2280 | R | HpyPO05XVIIIP (89% identity) | Hpy207ORF2285P | |
| 2285 | M | M.Hpy478AORFKP (95% identity) | M.Hpy207ORF2285P | |
| 2290 | endonuclease | |||
| 2335 | rod shape-determining protein MreC | |||
| 2340 | R | HpySP304ORF390P (94% identity) | Hpy207ORF2345P | |
| 2345 | M | M.HpyI004ORF6695P (94% identity) | M.Hpy207ORF2345P | |
| 2350 | chemotaxis protein CheY | |||
| 2870 | 54 aa hypothetical protein | |||
| 2875 | M | M.HpyU005XI (97% identity) | M.Hpy207ORF2875P | |
| 2880 | R | HpyKA1XVP (92% identity) | Hpy207ORF2875P | |
| 2885 | 2-oxoglutarate:acceptor oxidoreductase | |||
| 4530 | ATP-dependent DNA helicase RecG | |||
| ??? | M | M.HpyLI10ORF7485P (95% identity) | M.Hpy207ORF4535P | |
| 4545 | R | HpyKA1ORF7485P (94% identity) | Hpy207ORF4535P | |
| 4550 | restriction endonuclease | |||