Escherichia coli UCD_JA62 |
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Putative Escherichia coli UCD_JA62 RM systems
Ref: Coil,D. et al. unpublished
REBASE ref # 18751
Contig set: 5,336,948 bp
GenBank #: JFFM00000000 (NZ_JFFM00000000)
REBASE acronym: EcoJA62
Org_num: 14490
All begin BU68_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 15675 | restriction endonuclease | |||
| 15680 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoJA62ORF15680P |
| 15685 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoJA62ORF15680P |
| 15690 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoJA62ORF15680P |
| 15695 | endoribonuclease SymE | |||
| 20000 | 260 aa hypothetical protein | |||
| 20005 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoJA62ORF20010P |
| 20010 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoJA62ORF20010P |
| 20015 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoJA62ORF20010P |
| 20020 | 156 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 7895 | M | M.EcosS9ORF10680P (100% identity) | M.EcoJA62ORF7895P | |
| 7900 | 65 aa hypothetical protein | |||
| 11145 | 71 aa hypothetical protein | |||
| 11150 | M | M.KpnYN1ORFGP (89% identity) | M.EcoJA62ORF11150P | |
| 11155 | DNA-binding protein | |||
| 21925 | transposase | |||
| ??? | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.EcoJA62ORF21930P |
| 21935 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoJA62ORF21930P |
| 21940 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoJA62ORF21930P |
| 21945 | restriction endonuclease | |||
| 5070 | 73 aa hypothetical protein | |||
| 5075 | M | M.Sfl0030ORFCP (100% identity) | M.EcoJA62ORF5075P | |
| 5080 | 308 aa hypothetical protein | |||
| 21420 | 73 aa hypothetical protein | |||
| 21425 | M | M.UbapRSB107ORFAP (100% identity) | M.EcoJA62ORF21425P | |
| 21430 | 308 aa hypothetical protein | |||
| 4155 | ribulose-phosphate 3-epimerase | |||
| 4160 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoJA62DamP |
| 4165 | cell division protein DamX | |||
| 26815 | multidrug DMT transporter | |||
| 26820 | V | V.SflC32DcmP (74% identity) | V.EcoJA62DcmP | |
| 26825 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoJA62DcmP |
| 26830 | hydrolase | |||
| 26140 | Fis family transcriptional regulator | |||
| 26145 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoJA62ORF26145P |
| 26150 | 59 aa hypothetical protein | |||
| 16740 | carbon starvation induced protein | |||
| 16745 | M | M.Ecoi64ORF2425P (100% identity) | M.EcoJA62ORF16745P | |
| 16750 | peptide ABC transporter ATP-binding protein | |||
| 16815 | 162 aa hypothetical protein | |||
| 16820 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoJA62ORF16820P |
| 16825 | LexA family transcriptional regulator | |||
| 16855 | 67 aa hypothetical protein | |||
| 16860 | M | M.Sso63633ORF22290P (100% identity) | M.EcoJA62ORF16860P | |
| 16865 | holin | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 21940 | restriction endonuclease | |||
| 21945 | R | EcosS9McrCP (100% identity) | EcoJA62McrCP | |
| 21950 | R | EcosS3McrBP (100% identity) | EcoJA62McrBP | |
| 21955 | glycosyl transferase | |||