Escherichia coli O157:H7 SS52 |
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Putative Escherichia coli O157:H7 SS52 RM systems
Ref: Katani,R. et al. unpublished
REBASE ref # 19376
| Sequence length: | GenBank #: | |
| Chromosome: | 5,488,700 bp | CP010304 |
| plasmid p0157: | 94,730 bp | CP010305 |
REBASE acronym: EcoSS52
Org_num: 14459
All begin SS52_, SS52_p
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5717 | 113 aa hypothetical protein | |||
| 5718 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoSS52ORF5719P |
| 5719 | M | M.EcoX21ORF4993P (100% identity) | CACNNNNNNNCTGG | M.EcoSS52ORF5719P |
| 5720 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoSS52ORF5719P |
| 5721 | 94 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1768 | 106 aa hypothetical protein | |||
| 1769 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoSS52ORF1769P | |
| 1772 | YjhS | |||
| 2681 | Permease of the drug/metabolite transporter | |||
| 2682 | V | V.EcosPA8DcmP (100% identity) | V.EcoSS52DcmP | |
| 2683 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoSS52DcmP |
| 2684 | metal-dependent phosphohydrolase | |||
| 2860 | 252 aa hypothetical protein | |||
| 2861 | M | M.Eph2851ORFAP (100% identity) | GATC | M.EcoSS52ORF2861P |
| 2862 | Protein NinB | |||
| 3431 | NinE protein | |||
| 3432 | M | M.EcoTWORF3263P (100% identity) | GATC | M.EcoSS52ORF3432P |
| 3433 | endonuclease | |||
| 3461 | Phage protein | |||
| 3462 | M | M.EspP079ORF2847P (100% identity) | GATC | M.EcoSS52ORF3462P |
| 3463 | 70 aa hypothetical protein | |||
| 4447 | DNA-binding protein Fis | |||
| 4448 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoSS52ORF4448P |
| 4449 | periplasmic protein | |||
| 4557 | Ribulose-phosphate 3-epimerase | |||
| 4558 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoSS52DamP |
| 4559 | DamX, an inner membrane protein involved in bile | |||
| 5395 | 65 aa hypothetical protein | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.EcoSS52ORF5397P | |
| 5398 | 109 aa hypothetical protein | |||
| 5667 | ATP-dependent helicase | |||
| 5668 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoSS52ORF5668P |
| plasmid p0157 | ||||
| 32 | 41 aa hypothetical protein | |||
| 33 | M | M.EcosPA8ORF27775P (100% identity) | M.EcoSS52ORF33P | |
| 34 | 73 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 5714 | 54 aa hypothetical protein | |||
| 5715 | R | Ecos1613GmrSP (100% identity) | EcoSS52GmrSP | |
| 5716 | R | EcosPA8GmrSDP (55% identity) | EcoSS52GmrDP | |
| 5717 | 113 aa hypothetical protein | |||