Escherichia coli O25b:H4-ST131 EC958 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli O25b:H4-ST131 EC958 RM systems
Ref: Totsika,M. et al. PLoS ONE 6 (10), E26578 (2011)
REBASE ref # 17722
| Sequence length: | GenBank #: | |
| Chromosome: | 135,602 bp | HG941719 |
| Chromosome: | 5,109,767 bp | HG941718 |
REBASE acronym: EcoM
Org_num: 13018
All begin EC958_, EC958_A
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 423 | 41 aa hypothetical protein | |||
| 424 | S | S.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | S.EcoMIII |
| 425 | M | M.EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | M.EcoMIII |
| 426 | R | EcosS9ORF4930P (100% identity) | AAAGNNNNGTT | EcoMIIIP |
| 427 | 260 aa hypothetical protein | |||
| 75 | 112 aa hypothetical protein | |||
| 76 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoMII |
| 77 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoMII |
| 78 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoMII |
| 79 | restriction endonuclease domain-containing | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 8 | 103 aa hypothetical protein | |||
| 9 | M | M.UbapRSB107ORFAP (100% identity) | M.EcoMORF9P | |
| 10 | 73 aa hypothetical protein | |||
| Chromosome | ||||
| 1100 | 72 aa hypothetical protein | |||
| 1101 | M | M.KpnYN1ORFGP (89% identity) | M.EcoMORF1101P | |
| 1102 | helix-turn-helix protein | |||
| 1544 | 65 aa hypothetical protein | |||
| 1545 | M | M.EcosS9ORF10680P (100% identity) | M.EcoMORF1545P | |
| 5163 | 118 aa hypothetical protein | |||
| 2224 | transmembrane subunit | |||
| 2225 | V | V.SflC32DcmP (74% identity) | V.EcoMDcmP | |
| 2226 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoMDcmP |
| 2227 | 240 aa hypothetical protein | |||
| 3662 | site-specific DNA inversion stimulation factor | |||
| 3663 | M | M.EcoUTORF3704P (100% identity) | ATGCAT | M.EcoMORF3663P |
| 3664 | 68 aa hypothetical protein | |||
| 3777 | D-ribulose-5-phosphate 3-epimerase | |||
| 3778 | M | M.SspPIBDamP (100% identity) | GATC | M.EcoMDam |
| 3779 | membrane protein | |||
| 4082 | ATPase-like protein | |||
| 4083 | RM | EcosR9ORF15335P (100% identity) | CANCATC | EcoMVII |
| 4085 | 865 aa hypothetical protein | |||
| 7 | transposase | |||
| 8 | M | M2.EcosEC4ORF20110P (100% identity) | GGTCTC | M1.EcoMI |
| 9 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoMI |
| 10 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoMIP |
| 11 | McrBC domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 10 | type II restriction endonuclease | |||
| 11 | R | EcosS9McrCP (100% identity) | EcoMMcrCP | |
| 12 | R | EcosS3McrBP (100% identity) | EcoMMcrBP | |
| 5146 | 84 aa hypothetical protein | |||