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Putative Lactobacillus crispatus 2029 RM systems
Ref: Karlyshev,A.V. et al. Genome Announc 2 (1), e01221-13 (2014)
REBASE ref # 17140
Sequence length: | GenBank #: | |
Chromosome: | 2,193,123 bp | AVFH00000000 (NZ_AVFH00000000) |
Chromosome: | 2,500,140 bp | CP079206 |
REBASE acronym: Lcr2029
Org_num: 12239
All begin N580_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
??? | restriction endonuclease S | |||
1890 | M | M.LcrVSI24ORF5295P (100% identity) | M.Lcr2029ORF1890P | |
1895 | abortive phage resistance protein | |||
??? | R | Lcr2029ORF6265P (95% identity) | Lcr2029ORF1410P | |
Chromosome | ||||
6245 | SLAP domain-containing protein | |||
6250 | R | LcrVSI24ORF5295P (99% identity) | TACNNNNNNNTDCC | Lcr2029ORF6265P |
6255 | ATP-binding protein | |||
6260 | RloB family protein | |||
6265 | M | M.LcrVSI24ORF5295P (100% identity) | TACNNNNNNNTDCC | M.Lcr2029ORF6265P |
6270 | S | S.LcrVSI24ORF5295P (100% identity) | TACNNNNNNNTDCC | S.Lcr2029ORF6265P |
6275 | SIR2 family protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
5100 | addiction module toxin RelE | |||
5105 | S | S.LcrVSI21ORF8365P (100% identity) | S.Lcr2029ORF5110P | |
5110 | RM | LcrPMC201ORF4055P (100% identity) | Lcr2029ORF5110P | |
5115 | transposase | |||
6305 | XRE family transcriptional regulator | |||
??? | RM | LcrPMC201ORF3455P (99% identity) | Lcr2029ORF6310P | |
6325 | 166 aa hypothetical protein | |||
6560 | 69 aa hypothetical protein | |||
6565 | M | M.Lfa0062ORF1625P (72% identity) | M.Lcr2029ORF6565P | |
6570 | 48 aa hypothetical protein | |||
Chromosome | ||||
3670 | helix-turn-helix transcriptional regulator | |||
3675 | RM | LcrPMC201ORF3455P (100% identity) | Lcr2029ORF3675P | |
3680 | restriction endonuclease subunit S | |||
3950 | IS982 family transposase | |||
3955 | RM | LcrPMC201ORF4055P (100% identity) | Lcr2029ORF3955P | |
3960 | S | S.LcrVSI21ORF8365P (100% identity) | S.Lcr2029ORF3955P | |
3965 | type II toxin-antitoxin system YafQ family | |||
8105 | 61 aa hypothetical protein | |||
8110 | M | M.Seq9682ORF199P (59% identity) | M.Lcr2029ORF8110P | |
8115 | 98 aa hypothetical protein | |||
8180 | 154 aa hypothetical protein | |||
8185 | M | M.Lcr1226ORF2885P (100% identity) | M.Lcr2029ORF8185P | |
8190 | prepilin peptidase | |||
8240 | JAB domain-containing protein | |||
8245 | M | M.Lfa0062ORF1625P (72% identity) | M.Lcr2029ORF6565P | |
8250 | 250 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
9035 | M | M.LcrVSI21ORF1410P (32% identity) | M.Lcr2029ORF9035P | |
??? | R | Lcr2029ORF1550P (99% identity) | Lcr2029ORF9035P | |
9050 | 123 aa hypothetical protein | |||
Chromosome | ||||
1535 | glutamine-hydrolyzing GMP synthase | |||
1540 | M | M.LcrVSI21ORF1410P (63% identity) | M.Lcr2029ORF1540P | |
1545 | IS982 family transposase | |||
1545 | IS982 family transposase | |||
1550 | M | M.LcrVSI21ORF1410P (32% identity) | M.Lcr2029ORF1550P | |
1555 | R | Lcr2029ORF9035P (99% identity) | Lcr2029ORF1550P | |
1560 | 123 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
Chromosome | ||||
10220 | glutamate:gamma-aminobutyrate antiporter | |||
10225 | R | LcrVSI21ORF420P (100% identity) | Lcr2029ORF10225P | |
10230 | pseudogene | |||
Chromosome | ||||
530 | amino acid permease | |||
535 | R | LcrVSI21ORF420P (100% identity) | Lcr2029ORF10225P | |
540 | beta-lactamase family protein |