Escherichia coli RN587/1 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli RN587/1 RM systems
Ref: Hazen,T.H. et al. Genome Announc 1 (4), E00516-13 (2013)
REBASE ref # 16238
Contig set: 5,061,577 bp
GenBank #: ADUS00000000 (NZ_ADUS00000000)
REBASE acronym: Eco5871
Org_num: 11037
All begin ECRN5871_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1633 | 277 aa hypothetical protein | |||
| 1634 | M | M.EcoDCE7ORF18445P (100% identity) | M.Eco5871ORF1634P | |
| 1635 | S | S.EcoDCE7ORF18445P (100% identity) | S.Eco5871ORF1634P | |
| 1636 | 39 aa hypothetical protein | |||
| 1637 | R | EcoC84497ORFGP (100% identity) | Eco5871ORF1634P | |
| 1640 | 339 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5075 | 41 aa hypothetical protein | |||
| ??? | M | M.EcoEC0009ORF5530P (100% identity) | A | M.Eco5871ORF5078P |
| 5080 | 94 aa hypothetical protein | |||
| 5022 | carboxylate/Amino Acid/Amine Transporter family | |||
| 5023 | V | V.EcoSC477DcmP (100% identity) | V.Eco5871DcmP | |
| 5024 | M | M.EcoDCE7DcmP (100% identity) | CCWGG | M.Eco5871DcmP |
| 5025 | HD domain protein | |||
| 707 | ninB family protein | |||
| 708 | M | M.EcoC84497ORFIP (75% identity) | GATC | M.Eco5871ORF708P |
| 709 | 70 aa hypothetical protein | |||
| 3501 | major tail sheath protein | |||
| 3502 | M | M.EcoC84497ORFAP (100% identity) | M.Eco5871ORF3502P | |
| 3503 | enoyl-CoA hydratase/carnithine racemase-like | |||
| 201 | anti-sigma-28 factor, FlgM family protein | |||
| 202 | R | EcoC84497ORFEP (100% identity) | CCWGG | Eco5871ORF203P |
| 203 | M | M.EcoS7438ORFEP (100% identity) | CCWGG | M.Eco5871ORF203P |
| 204 | lateral flagellar P-ring addition protein | |||
| 4092 | 65 aa hypothetical protein | |||
| 4093 | M | M.EcoDEC5BORF2703P (100% identity) | A | M.Eco5871ORF4093P |
| 4096 | 72 aa hypothetical protein | |||
| 1628 | HNH endonuclease domain protein | |||
| 1629 | R | EcoC84497ORFJP (96% identity) | Eco5871ORF1629P | |
| 1630 | 436 aa hypothetical protein | |||
| 801 | 109 aa hypothetical protein | |||
| 802 | M | M.EcoC84497ORFCP (100% identity) | GATC | M.Eco5871ORF802P |
| 803 | replication protein A | |||
| 2619 | protein damX | |||
| 2620 | M | M.SspPIBDamP (100% identity) | GATC | M.Eco5871DamP |
| 2621 | ribulose-phosphate 3-epimerase | |||
| 872 | ASCH domain protein | |||
| 873 | M | M.EcoR70ORF6410P (100% identity) | GATC | M.Eco5871ORF873P |
| 874 | bacteriophage replication gene A family protein | |||
| 1550 | endodeoxyribonuclease RusA family protein | |||
| 1551 | M | M.Sen24770ORF310P (100% identity) | GATC | M.Eco5871ORF1551P |
| 1552 | 121 aa hypothetical protein | |||
| 2724 | 37 aa hypothetical protein | |||
| 2725 | M | M.EspP079ORF3959P (100% identity) | ATGCAT | M.Eco5871ORF2725P |
| 2726 | bacterial regulatory protein, Fis family | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4206 | DNA-invertase | |||
| 4207 | R | SsoSE61ORF22640P (100% identity) | YCGR | Eco5871McrAP |
| 4208 | isocitrate dehydrogenase domain protein | |||
| 1629 | HNH nuclease | |||
| 1630 | R | EcoC84497McrCP (100% identity) | Eco5871McrCP | |
| 1631 | R | mcrB domain protein | Eco5871McrBP | |
| 1632 | 43 aa hypothetical protein | |||