Salmonella enterica subsp. enterica serovar Typhimurium STm3 |
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Putative Salmonella enterica subsp. enterica serovar Typhimurium STm3 RM systems
Ref: Hogg,G. et al. Genome Announc 1 (3) (2013)
REBASE ref # 16105
Contig set: 4,900,724 bp
GenBank #: AMEB00000000 (NZ_AMEB00000000)
REBASE acronym: SenSTm3
Org_num: 10779
All begin B573_, ORF_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 22166 | endoribonuclease SymE | |||
| 22171 | S | S.StyUK1II (100% identity) | GAGNNNNNNRTAYG | S.SenSTm3ORF22176P |
| 22176 | M | M.StyUK1II (100% identity) | GAGNNNNNNRTAYG | M.SenSTm3ORF22176P |
| 22181 | R | StyUK1IIP (100% identity) | GAGNNNNNNRTAYG | SenSTm3ORF22176P |
| 22186 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16458 | DNA-binding protein Fis | |||
| 16463 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenSTm3ORF16463P |
| 16468 | 54 aa hypothetical protein | |||
| 9541 | DMT superfamily transporter inner membrane | |||
| 9546 | V | V.StyUK1DcmP (100% identity) | V.SenSTm3DcmP | |
| 9551 | M | M.StyUK1Dcm (100% identity) | CCWGG | M.SenSTm3DcmP |
| 9556 | hydrolase | |||
| 24106 | 73 aa hypothetical protein | |||
| 24111 | M | M.StyUK1ORFAP (100% identity) | M.SenSTm3ORF24111P | |
| 24116 | 62 aa hypothetical protein | |||
| 22009 | ABC-type sugar/spermidine/putrescine | |||
| 22014 | RM | SenSTm9ORF21385P (100% identity) | GATCAG | SenSTm3ORF22014P |
| 22019 | DNA repair ATPase | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1770 | inner membrane protein | |||
| 1775 | M | M.StyUK1I (100% identity) | CAGAG | M.SenSTm3ORF1775P |
| 1780 | R | StyUK1IP (99% identity) | CAGAG | SenSTm3ORF1775P |
| 1785 | 33 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 22181 | type I restriction enzyme EcoKI subunit R | |||
| 22186 | R | StyUK1MrrP (100% identity) | SenSTm3MrrP | |
| 22191 | toxin-antitoxin system, toxin component | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 9796 | 129 aa hypothetical protein | |||
| 9801 | M | M.StyUK1V (100% identity) | GATC | M.SenSTm3ORF9801P |
| 9806 | phage protein | |||
| 127 | DUF2732 family protein | |||
| 129 | M | M.SenSTm9ORF23047P (100% identity) | GATC | M.SenSTm3ORF1305P |
| 130 | 70 aa hypothetical protein | |||