Salmonella enterica subsp. enterica serovar Newport Shandong_3 |
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Putative Salmonella enterica subsp. enterica serovar Newport Shandong_3 RM systems
Ref: Zhang,J. et al. Genome Announc 1 (3), E00213-13 (2013)
REBASE ref # 15933
Contig set: 4,755,004 bp
GenBank #: AOGI00000000 (NZ_AOGI00000000)
REBASE acronym: SenS3
Org_num: 10573
All begin G207_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 11557 | endoribonuclease SymE | |||
| 11562 | S | S.SenRM108ORF19560P (100% identity) | GACNNNNNNNRTCC | S.SenS3ORF11567P |
| 11567 | M | M.SenS224ORF19910P (100% identity) | GACNNNNNNNRTCC | M.SenS3ORF11567P |
| 11572 | R | Spy5740IP (100% identity) | GACNNNNNNNRTCC | SenS3ORF11567P |
| 11577 | 322 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 22301 | 54 aa hypothetical protein | |||
| 22306 | M | M.StyUK1III (100% identity) | ATGCAT | M.SenS3ORF22306P |
| 22311 | Factor for inversion stimulation Fis, | |||
| 21389 | replication protein for prophage | |||
| 21394 | M | M.SspA39ORFGP (100% identity) | GATC | M.SenS3ORF21394P |
| 21399 | DksA/TraR protein family with a zinc | |||
| 17428 | Protein ninE | |||
| 17433 | M | M.Sen24415ORF15505P (99% identity) | GATC | M.SenS3ORF17433P |
| 17438 | Phage NinF | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16303 | major facilitator superfamily protein | |||
| 16308 | M | M.SenZYXORFDP (100% identity) | CAGAG | M.SenS3ORF16308P |
| 16313 | R | SenZYXORFDP (99% identity) | CAGAG | SenS3ORF16308P |
| 16318 | 33 aa hypothetical protein | |||