Escherichia coli TW11039 |
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Putative Escherichia coli TW11039 RM systems
Ref: Eppinger,M. et al. Genome Announc 1 (2), E0013412 (2013)
REBASE ref # 15767
Contig set: 5,596,176 bp
GenBank #: AKLW00000000 (NZ_AKLW00000000)
REBASE acronym: Eco11039
Org_num: 10405
All begin ECTW11039_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 72 | endoribonuclease symE | |||
| 73 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco11039ORF74P |
| 74 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco11039ORF74P |
| 75 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco11039ORF74P |
| 76 | 94 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3180 | 133 aa hypothetical protein | |||
| 3181 | M | M.Eph2851ORFAP (100% identity) | GATC | M.Eco11039ORF3181P |
| 3182 | ninB protein | |||
| 5758 | 41 aa hypothetical protein | |||
| 5759 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco11039ORF5759P | |
| 5760 | 73 aa hypothetical protein | |||
| 3174 | 37 aa hypothetical protein | |||
| 3175 | M | M.EcoPSUO103ORF8840P (100% identity) | M.Eco11039ORF3175P | |
| 3176 | 65 aa hypothetical protein | |||
| 21 | ATP-dependent helicase | |||
| 22 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco11039ORF22P |
| 4689 | ribulose-phosphate 3-epimerase | |||
| 4690 | M | DNA adenine methylase | GATC | M.Eco11039DamP |
| 4691 | protein damX | |||
| 5415 | 65 aa hypothetical protein | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.Eco11039ORFBP | |
| 5418 | 109 aa hypothetical protein | |||
| 4527 | DNA-binding protein fis | |||
| 4528 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco11039ORF4528P |
| 4529 | 37 aa hypothetical protein | |||
| 2866 | 306 aa hypothetical protein | |||
| 2867 | V | V.EcosPA8DcmP (100% identity) | V.Eco11039DcmP | |
| 2868 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco11039DcmP |
| 2869 | 231 aa hypothetical protein | |||
| 4211 | 40 aa hypothetical protein | |||
| 4212 | M | M.Ecos15739ORF2910P (100% identity) | M.Eco11039ORF4212P | |
| 4213 | phage protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 5814 | 349 aa hypothetical protein | |||
| 5815 | M | M.SflN97ORF8425P (99% identity) | GATC | M.Eco11039ORF5815P |
| 2998 | anti-termination protein | |||
| 2999 | M | M.EcoSCU488ORF190P (90% identity) | GATC | M.Eco11039ORF2999P |
| 3000 | ninB protein | |||