Escherichia coli PA3 |
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Putative Escherichia coli PA3 RM systems
Ref: Eppinger,M. et al. Genome Announc 1 (2), E0013412 (2013)
REBASE ref # 15767
Contig set: 5,369,127 bp
GenBank #: AKLC00000000 (NZ_AKLC00000000)
REBASE acronym: EcoPA3
Org_num: 10401
All begin ECPA3_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 28 | endoribonuclease symE | |||
| 29 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoPA3ORF30P |
| 30 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.EcoPA3ORF30P |
| 31 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoPA3ORF30P |
| 32 | 94 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2874 | anti-termination protein | |||
| 2875 | M | M.Eph2851ORFAP (100% identity) | GATC | M.EcoPA3ORF2875P |
| 2876 | ninB protein | |||
| 1826 | 65 aa hypothetical protein | |||
| 1827 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoPA3ORF1827P | |
| 1830 | 52 aa hypothetical protein | |||
| 3550 | 55 aa hypothetical protein | |||
| 3551 | M | M.EspP079ORF2847P (100% identity) | GATC | M.EcoPA3ORF3551P |
| 3552 | 70 aa hypothetical protein | |||
| 5741 | 41 aa hypothetical protein | |||
| 5742 | M | M.EcosPA8ORF27775P (100% identity) | M.EcoPA3ORF5742P | |
| 5743 | 73 aa hypothetical protein | |||
| 2749 | 306 aa hypothetical protein | |||
| ??? | V | V.EcosPA8DcmP (100% identity) | V.EcoPA3DcmP | |
| 2751 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoPA3DcmP |
| 2752 | 231 aa hypothetical protein | |||
| 4628 | ribulose-phosphate 3-epimerase | |||
| 4629 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoPA3DamP |
| 4630 | protein damX | |||
| 5707 | ATP-dependent helicase | |||
| 5708 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoPA3ORF5708P |
| 5442 | 65 aa hypothetical protein | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.EcoPA3ORFAP | |
| 5445 | 116 aa hypothetical protein | |||
| 4523 | DNA-binding protein fis | |||
| 4524 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoPA3ORF4524P |
| 4525 | 59 aa hypothetical protein | |||