Escherichia coli EC4439 |
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Putative Escherichia coli EC4439 RM systems
Ref: Eppinger,M. et al. Genome Announc 1 (2), E0013412 (2013)
REBASE ref # 15767
Contig set: 5,400,080 bp
GenBank #: AKMJ00000000 (NZ_AKMJ00000000)
REBASE acronym: Eco4439
Org_num: 10478
All begin ECEC4439_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 5675 | endoribonuclease symE | |||
| 5676 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.Eco4439ORF5677P |
| 5677 | M | M.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | M.Eco4439ORF5677P |
| 5678 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | Eco4439ORF5677P |
| 5679 | 87 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2883 | M | M.SflN97ORF15810P (96% identity) | GATC | M.Eco4439ORF2883P |
| 2884 | ninB protein | |||
| 3411 | M | M.EcoTWORF3263P (96% identity) | GATC | M.Eco4439ORF3411P |
| 3412 | 39 aa hypothetical protein | |||
| 1863 | lipoprotein | |||
| 1864 | M | M.EcosPA8ORF27255P (100% identity) | M.Eco4439ORF1864P | |
| 1867 | 43 aa hypothetical protein | |||
| 5349 | 65 aa hypothetical protein | |||
| ??? | M | M.Ecos1613ORF25555P (100% identity) | M.Eco4439ORF5350P | |
| 5352 | 114 aa hypothetical protein | |||
| 3446 | 55 aa hypothetical protein | |||
| 3447 | M | M.EspP079ORF2847P (100% identity) | GATC | M.Eco4439ORF3447P |
| 3448 | 70 aa hypothetical protein | |||
| 5842 | 41 aa hypothetical protein | |||
| 5843 | M | M.EcosPA8ORF27775P (100% identity) | M.Eco4439ORF5843P | |
| 5844 | 73 aa hypothetical protein | |||
| 2742 | 306 aa hypothetical protein | |||
| 2743 | V | V.EcosPA8DcmP (100% identity) | V.Eco4439DcmP | |
| 2744 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.Eco4439DcmP |
| 2745 | 231 aa hypothetical protein | |||
| 4527 | ribulose-phosphate 3-epimerase | |||
| 4528 | M | M.UbaC1152DamP (100% identity) | GATC | M.Eco4439DamP |
| 4529 | protein damX | |||
| 5621 | ATP-dependent helicase | |||
| 5622 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | Eco4439ORF5622P |
| 4421 | DNA-binding protein fis | |||
| 4422 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.Eco4439ORF4422P |
| 4423 | 37 aa hypothetical protein | |||