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Putative Cecembia lonarensis LW9 RM systems
Ref: Shivaji,S. et al. J. Bacteriol. 194 (23), 6631 (2012)
REBASE ref # 15194
Contig set: 4,842,844 bp
GenBank #: AMGM00000000 (NZ_AMGM00000000)
REBASE acronym: CloLW9
Org_num: 9634
All begin B879_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
2879 | S | S.Fax2ORF54630P (39% identity) | S.CloLW9ORF2881P | |
2880 | 377 aa hypothetical protein | |||
2881 | M | M.IalLW1ORF174P (92% identity) | M.CloLW9ORF2881P | |
2882 | transcription regulator containing HTH | |||
1075 | 52 aa hypothetical protein | |||
1076 | C | C.Ale2010ORFDP (80% identity) | C.CloLW9ORF1076P | |
1077 | Adenine specific DNA methylase Mod | |||
3561 | 5-methylcytosine-specific restriction enzyme B | |||
3562 | S | S4.Fsp3904ORFAP (35% identity) | S.CloLW9ORF3564P | |
3563 | Virulence protein | |||
3564 | M | M.CscJUb44ORF17815P (81% identity) | M.CloLW9ORF3564P | |
3565 | R | CspISE14ORF6310P (60% identity) | CloLW9ORF3564P | |
3566 | Transposase | |||
3552 | 385 aa hypothetical protein | |||
3553 | R | NhaLW7ORFBP (97% identity) | CloLW9ORF3553P | |
3554 | 185 aa hypothetical protein | |||
3264 | lactoylglutathione lyase-like protein | |||
3265 | R | Fsp83ORFFP (77% identity) | CloLW9ORF3270P | |
3266 | 280 aa hypothetical protein | |||
3267 | 272 aa hypothetical protein | |||
3268 | 193 aa hypothetical protein | |||
3269 | S | S.Fsp83ORFFP (45% identity) | S.CloLW9ORF3270P | |
3270 | M | M.Nar67ORF1995P (78% identity) | M.CloLW9ORF3270P | |
3271 | protein containing region found in RelA / SpoT | |||
1241 | GIY-YIG nuclease superfamily protein | |||
1242 | M | M.Bba15883ORF2142P (82% identity) | M.CloLW9ORF1242P | |
1243 | S | S.Aba17537ORF4447P (51% identity) | S.CloLW9ORF1242P | |
1244 | Piwi domain protein | |||
1247 | GxxExxY protein | |||
1248 | R | Bba15883ORF101P (98% identity) | CloLW9ORF1248P | |
1249 | 106 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
??? | RM | Bba15883ORF2725P (27% identity) | CloLW9ORFAP | |
??? | RM | DNA methyltransferase yeeA | CloLW9ORFBP | |
??? | RM | Asp4N3ORF4970P (46% identity) | CloLW9ORF3346P | |
3348 | 300 aa hypothetical protein | |||
3186 | M | M.LbyORF413P (93% identity) | CTRYAG | M.CloLW9ORF3186P |
3187 | 188 aa hypothetical protein | |||
3191 | 312 aa hypothetical protein | |||
3192 | M | M.Fco02TNORF13525P (83% identity) | GRCGYC | M.CloLW9ORF3192P |
3193 | R | SspPCS056ORF17095P (75% identity) | GRCGYC | CloLW9ORF3192P |
3194 | Thiol-disulfide oxidoreductase resA | |||
3132 | Oxaloacetate decarboxylase | |||
3133 | R | DprORF1015P (47% identity) | CloLW9ORF3134P | |
3134 | M | M.Dma2077ORF70150P (53% identity) | M.CloLW9ORF3134P | |
568 | 214 aa hypothetical protein | |||
569 | M | M.Bba15883ORF870P (66% identity) | CCGG | M.CloLW9ORF569P |
570 | 132 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
1076 | helix-turn-helix protein | |||
1077 | M | M.NhaLW7ORFAP (60% identity) | M.CloLW9ORF1077P | |
1078 | 357 aa hypothetical protein | |||
1079 | 70 aa hypothetical protein | |||
1080 | R | NhaLW7ORFAP (97% identity) | CloLW9ORF1077P | |
1081 | 555 aa hypothetical protein | |||
2861 | 88 aa hypothetical protein | |||
2862 | M | M.PmeBin120ORFAP (62% identity) | M.CloLW9ORF2862P | |
2863 | R | MspF43ORF32420P (67% identity) | CloLW9ORF2862P | |
2864 | 278 aa hypothetical protein | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
3559 | 204 aa hypothetical protein | |||
3560 | R | Fbr35035McrCP (45% identity) | CloLW9McrCP | |
3561 | R | BspD4McrBP (30% identity) | CloLW9McrBP | |
3562 | Type I restriction modification DNA specificity |