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Putative Helicobacter pylori Rif2 RM systems
Ref: Manolov,A. et al. unpublished
REBASE ref # 15228
Complete sequence: 1,667,890 bp
GenBank #: CP003906
REBASE acronym: HpyRif2
Org_num: 9672
All begin C730_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
2360 | 31 aa hypothetical protein | |||
2365 | S | S.HpyS299ORF3810P (100% identity) | S.HpyRif2ORF2375P | |
2370 | type I restriction enzyme M protein | |||
2375 | M | M.HpyS299ORF3810P (100% identity) | M.HpyRif2ORF2375P | |
2380 | R | HpyS299ORF3810P (100% identity) | HpyRif2ORF2375P | |
2385 | 631 aa hypothetical protein | |||
4055 | 48 aa hypothetical protein | |||
4060 | S | S.HpyS299IV (100% identity) | CTANNNNNNNNTGT | S.HpyRif2ORF4060P |
4065 | cadmium-transporting ATPase, P-type (cadA) | |||
4340 | hydroxyethylthiazole kinase | |||
4345 | R | HpyRif1ORF4365P (100% identity) | CTANNNNNNNNTGT | HpyRif2ORF4365P |
4350 | 33 aa hypothetical protein | |||
??? | S | S.HpyRif1ORF4365P (100% identity) | CTANNNNNNNNTGT | S.HpyRif2ORF4365P |
4365 | M | M.HpyRif1ORF4365P (100% identity) | CTANNNNNNNNTGT | M.HpyRif2ORF4365P |
4370 | 227 aa hypothetical protein | |||
7250 | 235 aa hypothetical protein | |||
7255 | R | HpyS299ORF7180P (99% identity) | HpyRif2ORF7260P | |
7260 | M | M.HpyS299ORF7180P (100% identity) | M.HpyRif2ORF7260P | |
7265 | S | S.HpyRif1ORF7260P (100% identity) | S.HpyRif2ORF7260P | |
7280 | biotin synthase | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
225 | 330 aa hypothetical protein | |||
230 | M | M2.HpyS299IIIP (100% identity) | CCTC | M1.HpyRif2ORF230P |
235 | M | M1.HpyS299III (100% identity) | CCTC | M2.HpyRif2ORF230P |
??? | R | HpyS299IIIP (98% identity) | CCTC | HpyRif2ORF230P |
250 | 419 aa hypothetical protein | |||
??? | HNH endonuclease family protein | |||
250 | R | HpyS299VIIIP (100% identity) | CCTTC | HpyRif2ORF255P |
255 | M | M.HpyS299VIII (100% identity) | CCTTC | M.HpyRif2ORF255P |
260 | sodium/proline symporter | |||
440 | malonyl CoA-acyl carrier protein transacylase | |||
445 | R | HpyS299VP (100% identity) | GATC | HpyRif2ORF450P |
450 | M | M.HpyS299V (100% identity) | GATC | M.HpyRif2ORF450P |
455 | alpha-1,2-fucosyltransferase | |||
1310 | exodeoxyribonuclease VII large subunit | |||
1315 | M | M.HpyS299VII (100% identity) | TCGA | M.HpyRif2ORF1315P |
1320 | 132 aa hypothetical protein | |||
1320 | 132 aa hypothetical protein | |||
??? | R | HpyS299ORF4845P (100% identity) | CCGG | HpyRif2ORF1330P |
1330 | M | M.HpyS299ORF4845P (100% identity) | CCGG | M.HpyRif2ORF1330P |
1335 | ATP-dependent protease binding subunit (clpB) | |||
1860 | 202 aa hypothetical protein | |||
1865 | R | HpyRif1ORF1870P (100% identity) | TCNNGA | HpyRif2ORF1870P |
??? | M | M.HpyS299ORF4305P (100% identity) | TCNNGA | M.HpyRif2ORF1870P |
1880 | biotin carboxylase | |||
2445 | 367 aa hypothetical protein | |||
2450 | M | M.HpyS299II (100% identity) | ATTAAT | M.HpyRif2ORF2450P |
2455 | 282 aa hypothetical protein | |||
2460 | GTP-binding protein TypA | |||
??? | M | M.HpyRif1ORFCP (100% identity) | ACNGT | M.HpyRif2ORFEP |
2475 | R | HpyRif1ORFCP (100% identity) | ACNGT | HpyRif2ORFEP |
??? | DNA methyltransferase | |||
2475 | 170 aa hypothetical protein | |||
??? | M | M.HpyS299ORF3700P (94% identity) | ACGT | M.HpyRif2ORFFP |
2490 | R | HpyS299ORF3700P (100% identity) | ACGT | HpyRif2ORFFP |
2495 | catalase-like protein | |||
2575 | DNA gyrase subunit B | |||
??? | M | M.HpyRif1ORFBP (100% identity) | GTAC | M.HpyRif2ORFDP |
??? | R | HpyRif1ORFBP (100% identity) | GTAC | HpyRif2ORFDP |
2600 | 403 aa hypothetical protein | |||
3450 | glycerol-3-phosphate dehydrogenase | |||
??? | RM | HpyRif1ORFAP (100% identity) | HpyRif2ORFGP | |
3470 | 449 aa hypothetical protein | |||
4680 | flagellar hook protein FlgE | |||
4685 | R | HpyS299ORF1570P (100% identity) | GTNNAC | HpyRif2ORF4690P |
4690 | M | M.HpyRif1ORF4690P (100% identity) | GTNNAC | M.HpyRif2ORF4690P |
4695 | rep helicase, single-stranded DNA-dependent | |||
5780 | 144 aa hypothetical protein | |||
5785 | M | M.HpyS299ORF435P (100% identity) | GCGC | M.HpyRif2ORF5785P |
5790 | 67 aa hypothetical protein | |||
6255 | 222 aa hypothetical protein | |||
6260 | M | M.HpyS299I (100% identity) | CATG | M.HpyRif2ORF6260P |
6265 | R | HpyRif1ORF6265P (100% identity) | CATG | HpyRif2ORF6260P |
6270 | serine acetyltransferase | |||
6975 | protease | |||
6980 | R | HpyS299ORF8615P (100% identity) | GANTC | HpyRif2ORF6985P |
6985 | M | M.HpyS299ORF8665P (100% identity) | GANTC | M.HpyRif2ORF6985P |
??? | Type IIG R-M system | |||
6985 | adenine-specific DNA methyltransferase | |||
??? | RM | HpyRif1ORF6990P (100% identity) | HpyRif2ORF6990P | |
7005 | nicotinate-nucleotide pyrophosphorylase | |||
7055 | response regulator | |||
7060 | R | HpyS299ORF7360P (100% identity) | GAAGA | HpyRif2ORF7065P |
7065 | M | M2.HpyS299ORF7360P (100% identity) | GAAGA | M1.HpyRif2ORF7065P |
7070 | M | M2.HpySWT04XIII (100% identity) | GAAGA | M2.HpyRif2ORF7065P |
7075 | adenine-specific DNA methylase | |||
7615 | DNA polymerase I | |||
??? | S | S.HpyRif1ORF7640P (100% identity) | S.HpyRif2ORF7625P | |
7625 | RM | HpyS299ORF6805P (100% identity) | HpyRif2ORF7625P | |
7630 | 191 aa hypothetical protein | |||
7855 | 179 aa hypothetical protein | |||
??? | RM | HpyRif1ORFEP (100% identity) | GCGTA | HpyRif2ORFAP |
7880 | type III restriction enzyme R protein (res) | |||
7960 | IS605 transposase (tnpA) | |||
7965 | M | M.HpyRif1ORF7980P (100% identity) | TGCA | M.HpyRif2ORF7965P |
7970 | R | HpyS299ORF6490P (100% identity) | TGCA | HpyRif2ORF7965P |
7975 | ubiquinol cytochrome c oxidoreductase, | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
3055 | 2-oxoglutarate-acceptor oxidoreductase subunit | |||
3060 | R | HpyS299VIP (97% identity) | GCAG | HpyRif2ORF3065P |
3065 | M | M.HpyS299VI (100% identity) | GCAG | M.HpyRif2ORF3065P |
3070 | 54 aa hypothetical protein | |||
7070 | type IIS restriction enzyme M2 protein (mod) | |||
??? | M | M.HpyRif1ORF7075P (100% identity) | TCAG | M.HpyRif2ORF7075P |
7085 | R | HpyS299ORF7350P (100% identity) | TCAG | HpyRif2ORF7075P |
7090 | rod shape-determining protein MreC | |||
??? | type IIS restriction enzyme R and M protein | |||
7880 | R | HpyS299ORF6570P (100% identity) | HpyRif2ORFBP | |
??? | M | M.HpyRif1ORFFP (100% identity) | M.HpyRif2ORFBP | |
7895 | ATP-dependent DNA helicase RecG | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
2635 | 34 aa hypothetical protein | |||
2640 | R | HpyS299GmrSD2P (100% identity) | HpyRif2GmrSDP | |
2645 | 50S ribosomal protein L9 |