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Putative Helicobacter pylori XZ274 RM systems
Ref: Guo,Y. et al. unpublished
REBASE ref # 14733
Complete sequence: 1,634,138 bp
GenBank #: CP003419
REBASE acronym: Hpy274
Org_num: 8908
All begin MWE_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
522 | polyphosphate kinase | |||
524 | S | S.HpyCA6III (97% identity) | S.Hpy274ORF526P | |
526 | M | M.HpySG26ORF3930P (97% identity) | M.Hpy274ORF526P | |
527 | R | Hpy2099ORF2290P (85% identity) | Hpy274ORF526P | |
529 | 582 aa hypothetical protein | |||
588 | 228 aa hypothetical protein | |||
??? | M | M.HpyCHN6ORF4140P (96% identity) | M.Hpy274ORF589P | |
591 | S | S.Hpy169ORF4350P (72% identity) | S.Hpy274ORF589P | |
592 | R | HpyJ009ORF2695P (97% identity) | Hpy274ORF589P | |
593 | hydroxyethylthiazole kinase | |||
656 | cadmium, zinc and cobalt-transporting ATPase | |||
657 | S | S.HpySW18ORF2470P (96% identity) | S.Hpy274ORF657P | |
658 | outer membrane protein HofF | |||
1721 | 43 aa hypothetical protein | |||
1722 | S | S.HpyJA112VII (97% identity) | S.Hpy274ORF1723P | |
??? | M | M.HpyK119ORF7290P (92% identity) | M.Hpy274ORF1723P | |
1725 | R | Hpybs3ORFKP (92% identity) | Hpy274ORF1723P | |
1726 | 235 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
44 | 46 aa hypothetical protein | |||
45 | M | M2.HpyU204VIII (99% identity) | GAAGA | M1.Hpy274ORF45P |
46 | M | M1.HpyHK711ORFKP (97% identity) | GAAGA | M2.Hpy274ORF45P |
47 | R | HpyK045VIP (98% identity) | GAAGA | Hpy274ORF45P |
48 | transcriptional regulator | |||
60 | nicotinate-nucleotide pyrophosphorylase | |||
61 | RM | HpySG19ORF250P (82% identity) | Hpy274ORF61P | |
66 | adenine specific DNA methyltransferase (HINFIM) | |||
61 | 1292 aa hypothetical protein N204_05600 | |||
66 | M | M.Hpyfe99ORF7240P (100% identity) | GANTC | M.Hpy274ORF66P |
67 | R | Hpyfe124ORF6820P (99% identity) | GANTC | Hpy274ORF66P |
68 | carboxyl-terminal processing protease | |||
77 | 53 aa hypothetical protein N199_01600 | |||
78 | M | M1.HpyCA20IV (98% identity) | CCTC | M1.Hpy274ORF78P |
79 | M | M2.HpyK034IIIP (98% identity) | CCTC | M2.Hpy274ORF78P |
??? | R | HpyML2ORFHP (82% identity) | CCTC | Hpy274ORF78P |
82 | adenine/cytosine DNA methyltransferase | |||
??? | restriction endonuclease | |||
82 | M | M.Hpy4109ORFKP (61% identity) | CCTTC | M.Hpy274ORF82P |
83 | symporter, SSS family (proline permease) | |||
181 | alpha-1,2-fucosyltransferase, partial | |||
182 | M | M.HpyK029VII (98% identity) | GATC | M.Hpy274ORF182P |
183 | R | HpyF211ORF143P (97% identity) | GATC | Hpy274ORF182P |
185 | acyl-carrier-protein S-malonyltransferase | |||
337 | exodeoxyribonuclease VII large subunit | |||
338 | R | Hpyfe83ORF5770P (93% identity) | CCGG | Hpy274ORF339P |
339 | M | adenine specific DNA methyltransferase (hpaim) | CCGG | M.Hpy274ORF339P |
340 | ATP-dependent protease binding subunit (ClpB) | |||
548 | 599 aa hypothetical protein | |||
549 | M | M.HpyMA05III (99% identity) | ACNGT | M.Hpy274ORF549P |
??? | R | HpyK105ORF2455P (79% identity) | ACNGT | Hpy274ORF549P |
552 | type II DNA modification enzyme | |||
??? | type II restriction endonuclease | |||
552 | M | M.Hpyfe52ORF4760P (97% identity) | ACGT | M.Hpy274ORF552P |
553 | R | HpyID9ORF2245P (87% identity) | ACGT | Hpy274ORF552P |
554 | 54 aa hypothetical protein | |||
622 | osmoprotection protein (proWX) | |||
623 | M | M.Hpyfe8ORF2470P (99% identity) | CGWCG | M.Hpy274ORF623P |
624 | R | Hpyfe78ORF3885P (99% identity) | CGWCG | Hpy274ORF623P |
625 | osmoprotection protein | |||
817 | 133 aa hypothetical protein | |||
818 | R | HpyJ026ORF3390P (98% identity) | GGNNCC | Hpy274ORF819P |
819 | M | M.HpyTN2ORF7450P (100% identity) | GGNNCC | M.Hpy274ORF819P |
820 | 270 aa hypothetical protein | |||
837 | 59 aa hypothetical protein | |||
838 | RM | HpyJ022ORF3310P (57% identity) | Hpy274ORF838P | |
839 | 606 aa hypothetical protein | |||
838 | helicase domain protein | |||
839 | RM | Hpyfe124ORF3675P (36% identity) | Hpy274ORF839P | |
840 | anaerobic glycerol-3-phosphate dehydrogenase, | |||
1019 | outer membrane protein | |||
??? | R | Hpy4109ORFWP (88% identity) | GTAC | Hpy274ORF1022P |
1022 | M | M.HpyP94ORFQP (98% identity) | GTAC | M.Hpy274ORF1022P |
1023 | DNA gyrase subunit B | |||
1064 | flagellar hook protein FlgE | |||
1065 | R | HpyBT112ORF2780P (96% identity) | GTNNAC | Hpy274ORF1066P |
1066 | M | M.HpyC212IX (98% identity) | GTNNAC | M.Hpy274ORF1066P |
1068 | rep helicase, single-stranded DNA-dependent | |||
1261 | biotin carboxylase | |||
1262 | M | M.HpyYN483ORFVP (99% identity) | TCNNGA | M.Hpy274ORF1262P |
1264 | R | 164 aa hypothetical protein | TCNNGA | Hpy274ORF1262P |
1265 | pseudogene | |||
1304 | 156 aa hypothetical protein | |||
1305 | M | M.Hpyfe13ORF2040P (97% identity) | GCGC | M.Hpy274ORF1305P |
1306 | 76 aa hypothetical protein | |||
1408 | 222 aa hypothetical protein | |||
1409 | M | M.Hpyfe59ORF1420P (97% identity) | CATG | M.Hpy274ORF1409P |
1410 | R | HpyOK115ORFAP (91% identity) | CATG | Hpy274ORF1409P |
1411 | serine acetyltransferase | |||
1657 | DNA polymerase I (PolA) | |||
1658 | S | 75 aa hypothetical protein | S.Hpy274ORF1659P | |
??? | RM | Hpy86ORF580P (97% identity) | Hpy274ORF1659P | |
1661 | 185 aa hypothetical protein | |||
1702 | transcription elongation factor NusA | |||
1703 | RM | type II S restriction-modification protein | Hpy274ORF1703P | |
1704 | type IIS restriction-modification protein, partial | |||
1703 | type II S restriction-modification protein | |||
1704 | RM | Hpyfe104ORF55P (65% identity) | Hpy274ORF1704P | |
1705 | type III restriction enzyme | |||
1746 | 68 aa hypothetical protein | |||
1747 | M | M.HpySG14ORF7415P (97% identity) | TGCA | M.Hpy274ORF1747P |
1748 | R | HpyLI25VP (97% identity) | TGCA | Hpy274ORF1747P |
1749 | 76 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
40 | rod shape-determining protein MreC | |||
41 | R | HpyP98ORFOP (93% identity) | Hpy274ORF42P | |
??? | M | M.HpyF226ORFKP (96% identity) | M.Hpy274ORF42P | |
44 | 46 aa hypothetical protein | |||
1573 | 42 aa hypothetical protein | |||
1574 | M | M.HpyK109ORF6600P (91% identity) | M.Hpy274ORF1574P | |
1575 | R | Hpy66ORF795P (91% identity) | Hpy274ORF1574P | |
1576 | pseudogene | |||
1704 | type IIS restriction-modification protein, partial | |||
1705 | R | Hpyfe53ORF3460P (97% identity) | Hpy274ORF1706P | |
??? | M | M.Hpyfe64ORF40P (96% identity) | M.Hpy274ORF1706P | |
1708 | ATP-dependent DNA helicase RecG | |||
Type IV | ||||
ORF | Gene | Most similar | Specificity | Name |
1010 | 50S ribosomal protein L9 | |||
1011 | R | HpyCHN7GmrSDP (52% identity) | Hpy274GmrSDBP | |
1012 | R | HpyC124GmrSDP (32% identity) | Hpy274GmrSDAP | |
1013 | glutamine synthetase (glutamate--ammonia |