Escherichia coli Xuzhou21 |
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Putative Escherichia coli Xuzhou21 RM systems
Ref: Xiong,Y. et al. PLoS ONE 7 (4), E36144 (2012)
REBASE ref # 14458
Complete sequence: 5,386,223 bp
GenBank #: CP001925
REBASE acronym: EcoX21
Org_num: 8813
All begin CDCO157_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 4991 | endoribonuclease SymE | |||
| 4992 | S | S.EcosPA8ORF17615P (100% identity) | CACNNNNNNNCTGG | S.EcoX21ORF4993P |
| 4993 | M | M.EcoTWI (100% identity) | CACNNNNNNNCTGG | M.EcoX21ORF4993P |
| 4994 | R | Ecos1613ORF27060P (100% identity) | CACNNNNNNNCTGG | EcoX21ORF4993P |
| 4996 | 550 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1146 | 148 aa hypothetical protein | |||
| ??? | M | M.EcoX21ORFCP (100% identity) | GATC | M.EcoX21ORFBP |
| 1148 | antirepressor protein | |||
| 1146 | 148 aa hypothetical protein | |||
| 1147 | M | M.SflWW1ORF7070P (100% identity) | GATC | M.EcoX21ORF1147P |
| 1148 | NinE | |||
| 1146 | 148 aa hypothetical protein | |||
| ??? | M | M.EcoX21ORFBP (100% identity) | GATC | M.EcoX21ORFCP |
| 1148 | antirepressor protein | |||
| 1709 | lipoprotein | |||
| 1710 | M | M.EcosPA8ORF27255P (100% identity) | M.EcoX21ORF1710P | |
| 1711 | 617 aa hypothetical protein | |||
| 2491 | 306 aa hypothetical protein | |||
| 2492 | V | V.EcosPA8DcmP (100% identity) | V.EcoX21DcmP | |
| 2493 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoX21DcmP |
| 2494 | 231 aa hypothetical protein | |||
| 2745 | NinE | |||
| 2746 | M | M.Eph2851ORFAP (100% identity) | GATC | M.EcoX21ORF2746P |
| 2747 | 148 aa hypothetical protein | |||
| 3873 | DNA-binding protein Fis | |||
| 3874 | M | M.EcosPA8ORF11510P (100% identity) | ATGCAT | M.EcoX21ORF3874P |
| 3875 | transport protein | |||
| 4945 | ATP-dependent helicase | |||
| 4946 | RM | EcosPA8ORF17390P (100% identity) | GAAABCC | EcoX21ORF4946P |
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4988 | 54 aa hypothetical protein | |||
| ??? | R | Ecos1613GmrSP (100% identity) | EcoX21GmrSP | |
| ??? | R | EcoPT54GmrDP (100% identity) | EcoX21GmrDP | |
| 4991 | endoribonuclease SymE | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3969 | ribulose-phosphate 3-epimerase | |||
| 3970 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoX21ORF3970P |
| 3971 | 428 aa hypothetical protein | |||