Escherichia coli O104:H4 C227-11 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli O104:H4 C227-11 RM systems
Ref: Rasko,D.A. et al. N. Engl. J. Med. 365 (8), 709-717 (2011)
REBASE ref # 13880
GenBank #: AFST00000000
REBASE acronym: EcoG
Org_num: 8139
All begin C22711_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 1457 | 550 aa hypothetical protein | |||
| 1458 | R | SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | EcoGIVP |
| 1459 | M | M.SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | M.EcoGIV |
| ??? | S | S.SspS13ORF3945P (100% identity) | RTCANNNNNNNNGTGG | S.EcoGIV |
| 1461 | 113 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1549 | 126 aa hypothetical protein | |||
| 1550 | R | Ecou021ORF20225P (100% identity) | EcoGORF1550P | |
| 1551 | 97 aa hypothetical protein | |||
| 2142 | 118 aa hypothetical protein | |||
| 2143 | M | M.Esp10290ORF1290P (100% identity) | GATC | M.EcoGV |
| 2144 | 117 aa hypothetical protein | |||
| 1741 | 28 aa hypothetical protein | |||
| 1742 | M | M.SsoL4094ORF17545P (100% identity) | A | M.EcoGI |
| 1743 | 65 aa hypothetical protein | |||
| 2124 | 237 aa hypothetical protein | |||
| 2125 | M | M.Sso1099I (100% identity) | CTGCAG | M.EcoGIII |
| 2126 | R | Sso1099IP (99% identity) | CTGCAG | EcoGIII |
| 2127 | 257 aa hypothetical protein | |||
| 3001 | fis | |||
| 3002 | M | M.EcotcmA3ORF12410P (100% identity) | ATGCAT | M.EcoGVI |
| 3003 | 59 aa hypothetical protein | |||
| 3415 | 225 aa hypothetical protein | |||
| 3416 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoGDam |
| 3417 | 428 aa hypothetical protein | |||
| 3879 | 65 aa hypothetical protein | |||
| 3880 | M | M.Sso90ORF15820P (100% identity) | GATC | M.EcoGVII |
| 3881 | 162 aa hypothetical protein | |||
| 3988 | 229 aa hypothetical protein | |||
| 3987 | V | V.SsoSE61DcmP (100% identity) | V.EcoGDcmP | |
| 3989 | M | M.SsoSE61DcmP (100% identity) | CCWGG | M.EcoGDcm |
| 3990 | yedJ | |||
| 3868 | 128 aa hypothetical protein | |||
| 3869 | M | M.EcoOS402ORF3850P (100% identity) | A | M.EcoGII |
| 3870 | 67 aa hypothetical protein | |||
| 5143 | 57 aa hypothetical protein | |||
| 5144 | M | M.Sso3794ORF26595P (100% identity) | SAY | M.EcoGIX |
| 5145 | 73 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 4374 | 770 aa hypothetical protein | |||
| 4375 | M | M.Kpn0718ORF815P (100% identity) | ACCACC | M.EcoGVIII |
| 4376 | 85 aa hypothetical protein | |||
| 4377 | R | Kpn0718ORF815P (91% identity) | ACCACC | EcoGVIII |
| 4378 | 383 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1461 | 113 aa hypothetical protein | |||
| 1462 | R | EcoM1887GmrSDP (65% identity) | EcoGGmrDP | |
| 1463 | R | SflLIN8GmrSDP (34% identity) | EcoGGmrSP | |
| 1464 | 54 aa hypothetical protein | |||