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Putative Helicobacter pylori 83 RM systems
Ref: Muzny,D. et al. unpublished
REBASE ref # 12323
Complete sequence: 1,617,426 bp
GenBank #: CP002605
REBASE acronym: Hpy83
Org_num: 7059
All begin HMPREF0462_
Type I | ||||
---|---|---|---|---|
ORF | Gene | Most similar | Specificity | Name |
497 | polyphosphate kinase 1 | |||
498 | S | S.HpyF209ORF467P (99% identity) | S.Hpy83ORF499P | |
499 | M | M.Hpy6ORF10270P (87% identity) | M.Hpy83ORF499P | |
??? | R | HpyP76ORFQP (95% identity) | Hpy83ORF499P | |
502 | 631 aa hypothetical protein | |||
557 | PAP2 family protein | |||
558 | M | M.HpyF225ORFTP (93% identity) | M.Hpy83ORF558P | |
??? | S | S.HpyP89ORFPP (96% identity) | S.Hpy83ORF558P | |
561 | R | HpyTN2ORF5590P (85% identity) | Hpy83ORF558P | |
562 | hydroxyethylthiazole kinase | |||
618 | cadmium-exporting ATPase | |||
619 | S | S.HpyUM023ORF5765P (99% identity) | S.Hpy83ORF619P | |
620 | outer membrane protein | |||
1530 | thymidylate synthase, flavin-dependent | |||
1531 | S | S.HpyMKM1ORF1442P (94% identity) | S.Hpy83ORF1533P | |
1532 | 258 aa hypothetical protein | |||
1533 | M | M.HpyJ013ORF7325P (98% identity) | M.Hpy83ORF1533P | |
1534 | R | HpyMKF3ORF1462P (96% identity) | Hpy83ORF1533P | |
1535 | 235 aa hypothetical protein | |||
Type II | ||||
ORF | Gene | Most similar | Specificity | Name |
51 | nicotinate-nucleotide diphosphorylase | |||
??? | RM | HpyCOL207ORF6670P (89% identity) | Hpy83ORF52P | |
54 | DNA (cytosine-5-)-methyltransferase | |||
??? | DNA methyltransferase | |||
54 | M | M.Hpyfe89ORF7150P (100% identity) | GANTC | M.Hpy83ORF54P |
55 | R | HpyK013VP (100% identity) | GANTC | Hpy83ORF54P |
56 | peptidase, S41 family | |||
63 | integral membrane protein TerC family | |||
64 | M | M1.Hpy192ORFUP (98% identity) | CCTC | M1.Hpy83ORF64P |
65 | M | M2.HpyML3ORFMP (78% identity) | CCTC | M2.Hpy83ORF64P |
66 | sodium/proline symporter | |||
145 | 133 aa hypothetical protein | |||
146 | M | M.HpyK046X (96% identity) | GATC | M.Hpy83ORF146P |
147 | 146 aa hypothetical protein | |||
312 | exodeoxyribonuclease VII, large subunit | |||
313 | M | M.HpyJ013X (98% identity) | TCGA | M.Hpy83ORF313P |
314 | 84 aa hypothetical protein | |||
314 | 84 aa hypothetical protein | |||
315 | R | Hpy28ORF294P (97% identity) | CCGG | Hpy83ORF316P |
316 | M | M.HpyUM077ORF765P (100% identity) | CCGG | M.Hpy83ORF316P |
317 | ATP-dependent chaperone protein ClpB | |||
367 | polysaccharide deacetylase | |||
368 | R | HpyMKF3ORF368P (99% identity) | CTNAG | Hpy83ORF369P |
369 | M | M.HpyMKF3ORF368P (99% identity) | CTNAG | M.Hpy83ORF369P |
370 | 125 aa hypothetical protein | |||
517 | outer membrane protein | |||
518 | M | M.HpyJ013ORF2420P (99% identity) | ATTAAT | M.Hpy83ORF518P |
519 | 282 aa hypothetical protein | |||
520 | GTP-binding protein TypA | |||
??? | M | M.Hpy6ORF10000P (96% identity) | ACNGT | M.Hpy83ORF521P |
523 | R | HpyK013ORF2470P (100% identity) | ACNGT | Hpy83ORF521P |
524 | 314 aa hypothetical protein | |||
725 | cysteine-rich domain protein | |||
??? | RM | HpyJ013ORF3435P (99% identity) | Hpy83ORF726P | |
728 | 282 aa hypothetical protein | |||
747 | 276 aa hypothetical protein | |||
748 | M | M.HpyK013ORF3580P (100% identity) | GGNNCC | M.Hpy83ORF748P |
749 | R | HpyK013ORF3580P (100% identity) | GGNNCC | Hpy83ORF748P |
750 | 133 aa hypothetical protein | |||
959 | flagellar hook protein FlgE | |||
960 | R | HpyK013ORF4580P (100% identity) | GTNNAC | Hpy83ORF961P |
961 | M | M.HpyJ013ORF4535P (98% identity) | GTNNAC | M.Hpy83ORF961P |
962 | UvrD/REP helicase | |||
1098 | acetyl-CoA carboxylase, biotin carboxylase | |||
1099 | M | M.Hpyfe120ORF2030P (100% identity) | TCNNGA | M.Hpy83ORF1099P |
1100 | R | Hpy21ORF222P (100% identity) | TCNNGA | Hpy83ORF1099P |
1101 | 214 aa hypothetical protein | |||
1131 | 156 aa hypothetical protein | |||
1132 | M | M.Hpyfe63ORF1855P (99% identity) | GCGC | M.Hpy83ORF1132P |
1133 | 67 aa hypothetical protein | |||
1219 | haloacid dehalogenase-like hydrolase | |||
1220 | M | M.HpyK006I (99% identity) | CATG | M.Hpy83ORF1220P |
1221 | R | HpyK013IP (74% identity) | CATG | Hpy83ORF1220P |
1222 | 47 aa hypothetical protein | |||
1452 | 79 aa hypothetical protein | |||
1453 | M | M1.HpyK013VII (100% identity) | GGATG | M1.Hpy83ORF1453P |
1454 | M | M1.Hpyfe22ORF285P (100% identity) | GGATG | M2.Hpy83ORF1453P |
1455 | R | Hpy55ORF1440P (100% identity) | GGATG | Hpy83ORF1453P |
1456 | 191 aa hypothetical protein | |||
1481 | permease, YjgP/YjgQ family | |||
1482 | M | M2.HpySG04III (100% identity) | CCATC | M2.Hpy83ORF1482P |
??? | M | M2.Hpyfe88ORF155P (100% identity) | GATGG | M1.Hpy83ORF1482P |
??? | R | Hpy72ORF1404P (99% identity) | CCATC | Hpy83ORF1482P |
1487 | outer membrane protein | |||
1500 | transcription termination factor NusA | |||
1501 | RM | Hpy39ORFNP (91% identity) | Hpy83ORF1501P | |
1502 | 152 aa hypothetical protein | |||
1552 | 68 aa hypothetical protein | |||
1553 | M | M.HpyK050X (99% identity) | TGCA | M1.Hpy83ORF1553P |
1554 | R | HpyNCI25IIP (93% identity) | TGCA | Hpy83ORF1553P |
1555 | M | M.HpyK013ORF7530P (99% identity) | M2.Hpy83ORF1553P | |
1556 | 254 aa hypothetical protein | |||
Type III | ||||
ORF | Gene | Most similar | Specificity | Name |
36 | rod shape-determining protein MreC | |||
37 | R | HpyJ028XIIIP (96% identity) | Hpy83ORF38P | |
??? | M | M.HpyF226ORFKP (96% identity) | M.Hpy83ORF38P | |
41 | response regulator receiver domain protein | |||
1516 | 225 aa hypothetical protein | |||
1517 | R | Hpy5ORF70P (97% identity) | Hpy83ORF1518P | |
??? | M | M.Hpy5ORF70P (99% identity) | M.Hpy83ORF1518P | |
1520 | ATP-dependent DNA helicase RecG |