Clostridiales species SS3/4 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Clostridiales species SS3/4 RM systems
Ref: Pajon,A. et al. unpublished
REBASE ref # 11878
Complete sequence: 3,601,020 bp
GenBank #: FP929062
REBASE acronym: CspSS
Org_num: 6102
All begin CK3_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 16110 | orotidine 5-phosphate decarboxylase, subfamily | |||
| ??? | R | PmeBin125ORFEP (99% identity) | CspSSORF16170P | |
| ??? | S | S3.PmeBin125ORFEP (99% identity) | S.CspSSORF16170BP | |
| ??? | S | S1.PmeBin63ORFEP (54% identity) | S.CspSSORF16170AP | |
| 16160 | Virulence protein | |||
| 16170 | M | M.PmeBin125ORFEP (97% identity) | M.CspSSORF16170P | |
| 16180 | C | C.Cdi21302ORFGP (68% identity) | C.CspSSORF16170P | |
| 16190 | Nitroreductase | |||
| 32330 | Predicted ATP-dependent endonuclease of the OLD | |||
| 32340 | S | S.BveTZS01ORF615P (23% identity) | S.CspSSORF32450P | |
| 32350 | Type I restriction-modification system | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2190 | YqaJ-like viral recombinase domain. | |||
| 2200 | M | M.Cma2767ORF61640P (23% identity) | M.CspSSORF2200P | |
| 2210 | 40 aa hypothetical protein | |||
| 3820 | Plasmid stabilisation system protein. | |||
| ??? | M | M.Cba1747ORF1606P (61% identity) | GCGC | M.CspSSORFAP |
| 3840 | 478 aa hypothetical protein | |||
| 5730 | Mu-like prophage protein gp29 | |||
| ??? | M | M.PmeBin527ORFAP (80% identity) | M.CspSSORFBP | |
| 5750 | phage uncharacterized protein (putative large | |||
| 5840 | Protein of unknown function (DUF1018). | |||
| ??? | M | M.Ccl11224ORF3494P (64% identity) | CAATTG | M.CspSSORFCP |
| 5860 | Bacteriophage Mu Gam like protein. | |||
| 12990 | SpoVG. | |||
| 13000 | M | M1.Sva1ORF2904P (99% identity) | CTSAG | M.CspSSORF13000P |
| 13010 | Transcriptional activator, adenine-specific DNA | |||
| 13000 | DNA modification methylase | |||
| 13010 | M | M2.PmeBin88ORFFP (83% identity) | M.CspSSORF13010P | |
| 13020 | 129 aa hypothetical protein | |||
| 21890 | Uncharacterized conserved protein | |||
| 21920 | V | V.Rin50ORF12000P (78% identity) | V.CspSSORF21960P | |
| 21930 | R | CbaF4ORF10515P (24% identity) | R1.CspSSORF21960P | |
| 21940 | R | CbaF4ORF10515P (12% identity) | R2.CspSSORF21960P | |
| 21950 | R | R1.Rgn6515ORF12755P (38% identity) | R3.CspSSORF21960P | |
| 21960 | M | M.Rgns29149ORF255P (78% identity) | RCCGGB | M.CspSSORF21960P |
| 21970 | 65 aa hypothetical protein | |||
| 32340 | Type I restriction modification DNA specificity | |||
| 32350 | RM | PmeBin189ORFDP (91% identity) | CspSSORF32350P | |
| 32360 | 382 aa hypothetical protein | |||
| 35410 | Antirestriction protein (ArdA). | |||
| 35420 | M | M.PmeBin256ORFBP (99% identity) | M.CspSSORF35420P | |
| 35430 | 118 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 3950 | Uncharacterized conserved protein | |||
| 3960 | R | Restriction endonuclease | CspSSMrrP | |
| 3970 | Predicted transcriptional regulator | |||