Escherichia coli Z1323CEC0008 |
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Putative Escherichia coli Z1323CEC0008 RM systems
Ref: Chae,J.-C. et al. unpublished
REBASE ref # 37751
Complete sequence: 5,152,788 bp
GenBank #: CP148461
REBASE acronym: EcoC0008
Org_num: 76640
All begin WHU27_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 2920 | endoribonuclease SymE | |||
| 2925 | S | S.Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | S.EcoC0008ORF2930P |
| 2930 | M | M.Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | M.EcoC0008ORF2930P |
| 2935 | R | Ecos15955ORF12100P (100% identity) | RTCANNNNNNNCTTC | EcoC0008ORF2930P |
| 2940 | adenine/cytosine-specific restriction | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 20 | 318 aa hypothetical protein | |||
| 25 | M | M.EcoSCU109ORF25P (100% identity) | M.EcoC0008ORF25P | |
| 30 | phage portal protein | |||
| 4100 | NinE family protein | |||
| 4105 | M | M.EcoPEC0001ORF4630P (100% identity) | GATC | M.EcoC0008ORF4105P |
| 4110 | recombination protein NinB | |||
| 7745 | TraR/DksA family transcriptional regulator | |||
| 7750 | M | M.EcoPEC0001ORF980P (100% identity) | GATC | M.EcoC0008ORF7750P |
| 7755 | replication endonuclease | |||
| 8735 | DUF977 family protein | |||
| 8740 | M | M.EcoPEC0001ORF215P (100% identity) | M.EcoC0008ORF8740P | |
| 8745 | 84 aa hypothetical protein | |||
| 9700 | phosphohydrolase | |||
| 9705 | M | M.SdySWHE2DcmP (100% identity) | CCWGG | M.EcoC0008DcmP |
| 9710 | V | V.SdySWHE2DcmP (100% identity) | V.EcoC0008DcmP | |
| 9715 | drug/metabolite exporter YedA | |||
| 10905 | recombination protein NinB | |||
| 10910 | M | M.EcoPEC0001ORF24880P (100% identity) | GATC | M.EcoC0008ORF10910P |
| 10915 | NinE family protein | |||
| 14355 | 60 aa hypothetical protein | |||
| 14360 | M | M.SsoSE61ORF20220P (100% identity) | M.EcoC0008ORF14360P | |
| 14365 | IS3 family transposase | |||
| 15950 | NinE family protein | |||
| 15955 | M | M.EcoPEC0001ORF18680P (100% identity) | GATC | M.EcoC0008ORF15955P |
| 15960 | recombination protein NinB | |||
| 18435 | PerC family transcriptional regulator | |||
| 18440 | M | M.EcoC0014ORF10040P (100% identity) | M.EcoC0008ORF18440P | |
| 18445 | serine/threonine protein phosphatase | |||
| 22740 | DNA-binding transcriptional regulator Fis | |||
| 22745 | M | M.Sso8ORF2545P (100% identity) | ATGCAT | M.EcoC0008ORF22745P |
| 22750 | DUF2556 family protein | |||
| 23365 | ribulose-phosphate 3-epimerase | |||
| 23370 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoC0008DamP |
| 23375 | cell division protein DamX | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2935 | type I restriction-modification system | |||
| 2940 | R | Ssp28760MrrP (100% identity) | EcoC0008MrrP | |
| 2945 | GTPase | |||
| 12130 | tail fiber assembly protein | |||
| 12135 | R | EcoPEC0001McrBP (100% identity) | EcoC0008McrBP | |
| 12140 | R | Ecos15955McrCP (95% identity) | EcoC0008McrCP | |
| 12145 | isocitrate/isopropylmalate family dehydrogenase | |||