Salmonella enterica subsp. enterica serovar Pomona CFSAN024552 |
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Putative Salmonella enterica subsp. enterica serovar Pomona CFSAN024552 RM systems
Ref: Hoffmann,M. et al. unpublished
REBASE ref # 32354
| Sequence length: | GenBank #: | |
| Chromosome: | 4,660,983 bp | CP147852 |
| plasmid pCFSAN024552: | 110,917 bp | CP147853 |
REBASE acronym: Sen552
Org_num: 76590
All begin JYN06_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19540 | 322 aa hypothetical protein | |||
| 19545 | R | Sen10729IIP (100% identity) | CGAYNNNNNNNRTRTC | Sen552ORF19550P |
| 19550 | M | M.SenUA36ORF834P (100% identity) | CGAYNNNNNNNRTRTC | M.Sen552ORF19550P |
| 19555 | S | S.SenUA36ORF834P (100% identity) | CGAYNNNNNNNRTRTC | S.Sen552ORF19550P |
| 19560 | endoribonuclease SymE | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1665 | cell division protein DamX | |||
| 1670 | M | M.StyTDamP (100% identity) | GATC | M.Sen552DamP |
| 1675 | ribulose-phosphate 3-epimerase | |||
| 2155 | DUF2556 family protein | |||
| 2160 | M | M.StyUK1III (100% identity) | ATGCAT | M.Sen552ORF2160P |
| 2165 | DNA-binding transcriptional regulator Fis | |||
| 8760 | DUF1187 family protein | |||
| 8765 | M | M.Sens29945ORF12870P (100% identity) | M.Sen552ORF8765P | |
| 8770 | 77 aa hypothetical protein | |||
| 8895 | lysozyme | |||
| 8900 | M | M.Sen51401ORF13030P (78% identity) | M.Sen552ORF8900P | |
| 8905 | 55 aa hypothetical protein | |||
| 9085 | phosphohydrolase | |||
| 9090 | M | M.Sen3039DcmP (100% identity) | CCWGG | M.Sen552DcmP |
| 9095 | V | V.StyUK1DcmP (100% identity) | CCWGG | V.Sen552DcmP |
| 9100 | drug/metabolite exporter YedA | |||
| 14455 | phage holin | |||
| 14465 | S | S.Sen17963ORF14300P (98% identity) | S.Sen552ORF14470P | |
| 14470 | RM | Sen17963ORF14300P (100% identity) | Sen552ORF14470P | |
| 14475 | antiterminator Q family protein | |||
| 19680 | YebC/PmpR family DNA-binding transcriptional | |||
| 19685 | R | Ssp8103ORF19015P (100% identity) | Sen552ORF19685P | |
| 19690 | sce7725 family protein | |||
| 20535 | TA system toxin CbtA family protein | |||
| 20540 | M | M.Sen10729ORF6403P (95% identity) | M.Sen552ORF20540P | |
| 20545 | R | SenSARA26ORF20210P (100% identity) | CCGCGG | Sen552ORF20540P |
| 20550 | helix-turn-helix domain-containing protein | |||
| plasmid pCFSAN024552 | ||||
| 23110 | 73 aa hypothetical protein | |||
| 23115 | M | M.Sen552ORF23300P (100% identity) | M.Sen552ORF23115P | |
| 23120 | 115 aa hypothetical protein | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 17210 | small effector SsaA | |||
| 17215 | R | Sen7697ORF17040P (100% identity) | CAGAG | Sen552ORF17220P |
| 17220 | M | M.Sens29882ORF18310P (100% identity) | CAGAG | M.Sen552ORF17220P |
| 17225 | MFS transporter | |||