Salmonella enterica subsp. enterica serovar Indiana SJTUF14184V2 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Salmonella enterica subsp. enterica serovar Indiana SJTUF14184V2 RM systems
Ref: Zhang,Z. and Shi,C. unpublished
REBASE ref # 38475
Complete sequence: 4,940,590 bp
GenBank #: CP145804
REBASE acronym: Sen4V2
Org_num: 76308
All begin V6Z56_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 21620 | AAA family ATPase | |||
| 21625 | S | S.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | S.Sen4V2ORF21630P |
| 21630 | M | M.SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | M.Sen4V2ORF21630P |
| 21635 | R | SspZ54ORF5015P (100% identity) | TGANNNNNNCTTC | Sen4V2ORF21630P |
| 21640 | transposase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 1755 | cell division protein DamX | |||
| 1760 | M | M.StyTDamP (100% identity) | GATC | M.Sen4V2DamP |
| 1765 | ribulose-phosphate 3-epimerase | |||
| 2250 | DUF2556 family protein | |||
| 2255 | M | M.Sensp14152ORF2240P (100% identity) | ATGCAT | M.Sen4V2ORF2255P |
| 2260 | DNA-binding transcriptional regulator Fis | |||
| 3140 | DUF3850 domain-containing protein | |||
| 3145 | M | M.SspZ54ORF6040P (100% identity) | GATC | M.Sen4V2ORF3145P |
| 3150 | replication endonuclease | |||
| 3460 | DEAD/DEAH box helicase | |||
| 3465 | RM | SflLIN17ORF3140P (100% identity) | Sen4V2ORF3465P | |
| 3470 | transposase | |||
| 9670 | phosphohydrolase | |||
| 9675 | M | M.SspZ54DcmP (100% identity) | CCWGG | M.Sen4V2DcmP |
| 9680 | V | V.Sensp14178DcmP (100% identity) | CCWGG | V.Sen4V2DcmP |
| 9685 | drug/metabolite exporter YedA | |||
| 20600 | YebC/PmpR family DNA-binding transcriptional | |||
| 20605 | R | Sensp14178ORF19855P (100% identity) | Sen4V2ORF20605P | |
| 20610 | Wadjet anti-phage system protein JetD | |||
| 20645 | sigma factor-like helix-turn-helix DNA-binding | |||
| 20650 | R | SenV2ORF20065P (100% identity) | Sen4V2ORF20650P | |
| 20655 | malate transporter | |||
| Type III | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 17630 | small effector SsaA | |||
| 17635 | R | Sensp14154ORF17330P (100% identity) | CAGAG | Sen4V2ORF17645P |
| 17640 | IS1-like element IS1B family transposase | |||
| 17645 | M | M.Sensp14152ORF17835P (100% identity) | CAGAG | M.Sen4V2ORF17645P |
| 17650 | MFS transporter | |||
| 20685 | S8 family peptidase | |||
| 20690 | M | M.Sensp14178ORF19930P (100% identity) | CGGAAC | M.Sen4V2ORF20690P |
| 20695 | R | Sensp14178ORF19930P (100% identity) | CGGAAC | Sen4V2ORF20690P |
| 20700 | integrase arm-type DNA-binding domain-containing | |||