Prevotella bivia TOH-2715 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Prevotella bivia TOH-2715 RM systems
Ref: Ito,Y. et al. unpublished
REBASE ref # 38308
| Sequence length: | GenBank #: | |
| chromosome 1: | 1,320,260 bp | AP029375 |
| chromosome 2: | 1,256,162 bp | AP029376 |
REBASE acronym: Pbi5
Org_num: 75603
All begin TOH2715_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1140 | 167 aa hypothetical protein | |||
| 1150 | C | C.PmeOORF6123P (95% identity) | C.Pbi5ORF1160P | |
| 1160 | M | M.Pbi727ORF3965P (99% identity) | M.Pbi5ORF1160P | |
| 1170 | tyrosine-type recombinase/integrase | |||
| 1180 | S | S1.Ppa13043ORF547P (94% identity) | S1.Pbi5ORF1160P | |
| 1190 | 297 aa hypothetical protein | |||
| 1200 | S | S1.Pdi11157IP (58% identity) | S2.Pbi5ORF1160P | |
| 1210 | S | S3.Pdi11157I (99% identity) | GCAYNNNNTTC | S3.Pbi5ORF1160P |
| 1220 | 211 aa hypothetical protein | |||
| 1230 | R | Por13071IP (99% identity) | Pbi5ORF1160P | |
| 1240 | 439 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| chromosome 1 | ||||
| 1670 | DNA damage-inducible protein D | |||
| 1680 | M | M.Pbi727ORF3720P (100% identity) | M.Pbi5ORF1680P | |
| 1690 | R | Pin1101ORFEP (13% identity) | Pbi5ORF1680P | |
| 1700 | 783 aa hypothetical protein | |||
| 2160 | site-specific tyrosine recombinase XerD | |||
| 2170 | M | M.Pbi7760CORF201572P (100% identity) | CCGG | M.Pbi5ORF2170P |
| 2180 | R | Pbi10ORF379P (99% identity) | CCGG | Pbi5ORF2170P |
| 2190 | type II 3-dehydroquinate dehydratase | |||
| 5050 | MobV family relaxase | |||
| 5060 | M | M.Pbi727ORF2040P (98% identity) | M.Pbi5ORF5060P | |
| 5070 | 115 aa hypothetical protein | |||
| chromosome 2 | ||||
| 13480 | 142 aa hypothetical protein | |||
| ??? | M | M.Pmu96ORF6505P (87% identity) | M.Pbi5ORF13490P | |
| 13500 | 91 aa hypothetical protein | |||
| 16210 | 133 aa hypothetical protein | |||
| 16220 | M | M.PspF0043DndEP (96% identity) | M.Pbi5DndEP | |
| 16230 | SMC family ATPase | |||
| 16220 | 536 aa hypothetical protein | |||
| 16230 | M | M.PspF0043DndDP (98% identity) | M.Pbi5DndDP | |
| 16240 | 445 aa hypothetical protein | |||
| 16230 | SMC family ATPase | |||
| 16240 | M | M.Pme0695DndCP (97% identity) | M.Pbi5DndCP | |
| 16250 | helix-turn-helix transcriptional regulator | |||
| 17630 | 304 aa hypothetical protein | |||
| 17640 | R | Pco7716ORF2428P (92% identity) | Pbi5ORF17650P | |
| 17650 | M | M.Pco7716ORF2428P (91% identity) | M.Pbi5ORF17650P | |
| 17660 | 145 aa hypothetical protein | |||