Xanthomonas campestris pv. campestris WHRI 8978 |
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Putative Xanthomonas campestris pv. campestris WHRI 8978 RM systems
Ref: Hussain,R.M.F. et al. unpublished
REBASE ref # 38361
Complete sequence: 5,120,633 bp
GenBank #: CP142009
REBASE acronym: Xca8978
Org_num: 75857
All begin VDR56_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 6035 | SprT family zinc-dependent metalloprotease | |||
| 6040 | R | XcaXY11ORF6160P (100% identity) | CAAGNNNNNCTTA | Xca8978ORF6060P |
| 6045 | S | S2.XcaTJORFBP (100% identity) | CAAGNNNNNCTTA | S.Xca8978ORF6060P |
| 6050 | 85 aa hypothetical protein | |||
| 6055 | BRO family protein | |||
| 6060 | M | M.XcaTJORFBP (100% identity) | CAAGNNNNNCTTA | M.Xca8978ORF6060P |
| 6065 | restriction endonuclease subunit S | |||
| 16495 | 98 aa hypothetical protein | |||
| 16500 | R | XcaSB80ORF16515P (100% identity) | Xca8978ORF16515P | |
| 16505 | S | S.XcaTJORFEP (100% identity) | S.Xca8978ORF16515P | |
| 16510 | virulence RhuM family protein | |||
| 16515 | M | M.XcaTJORFEP (100% identity) | M.Xca8978ORF16515P | |
| 16520 | restriction endonuclease | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2985 | IS3-like element IS1404 family transposase | |||
| 2990 | R | XcaYORFAP (100% identity) | Xca8978ORF2990P | |
| 2995 | 90 aa hypothetical protein | |||
| 10575 | AAA family ATPase | |||
| ??? | M | M.XcaYORFEP (59% identity) | M.Xca8978ORF10580P | |
| 10585 | DNA topoisomerase III | |||
| 22315 | HigA family addiction module antitoxin | |||
| 22320 | M | M.XcaSB80ORF22350P (100% identity) | M.Xca8978ORF22320P | |
| 22325 | exodeoxyribonuclease V subunit beta | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 16515 | class I SAM-dependent DNA methyltransferase | |||
| 16520 | R | XcaYMrrP (100% identity) | Xca8978MrrP | |
| 16525 | type II toxin-antitoxin system RelE/ParE family | |||
| 22275 | RluA family pseudouridine synthase | |||
| 22280 | R | XcaYMrr2P (90% identity) | Xca8978Mrr2P | |
| 22285 | topoisomerase DNA-binding C4 zinc finger | |||