Clostridioides difficile cd221108_barcode08 |
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Putative Clostridioides difficile cd221108_barcode08 RM systems
Ref: White,R.T. and Bloomfield,M. unpublished
REBASE ref # 38241
Complete sequence: 4,168,836 bp
GenBank #: CP144679
REBASE acronym: Cdi08
Org_num: 75319
All begin cd221108_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 3166 | 687 aa hypothetical protein | |||
| 3167 | R | CdiS122ORF2565P (100% identity) | TAGNNNNNRTGAA | Cdi08ORF3172P |
| 3168 | 142 aa hypothetical protein | |||
| 3169 | 126 aa hypothetical protein | |||
| 3170 | 102 aa hypothetical protein | |||
| 3171 | S | S.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | S.Cdi08ORF3172P |
| 3172 | M | M.Pdi30ORF18320P (100% identity) | TAGNNNNNRTGAA | M.Cdi08ORF3172P |
| 3173 | D-tagatose-1,6-bisphosphate aldolase subunit | |||
| 3279 | 56 aa hypothetical protein | |||
| 3280 | R | Pdi30ORF18845P (100% identity) | ATTYNNNNNCTTC | Cdi08ORF3283P |
| 3281 | 423 aa hypothetical protein | |||
| 3282 | S | S.Pdi30ORF18845P (99% identity) | ATTYNNNNNCTTC | S.Cdi08ORF3283P |
| 3283 | M | M.CdiS122ORF3110P (100% identity) | ATTYNNNNNCTTC | M.Cdi08ORF3283P |
| 3284 | 115 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2910 | patatin-like phospholipase family protein | |||
| 2912 | M | M.PdiZ31ORF1541P (100% identity) | CAAAAA | M.Cdi08ORF2912P |
| 2913 | 132 aa hypothetical protein | |||
| 3245 | 33 aa hypothetical protein | |||
| 3246 | M | M.Pdi6602ORF710333P (100% identity) | GCNGC | M.Cdi08ORF3246P |
| 3247 | 872 aa hypothetical protein | |||
| 3261 | 383 aa hypothetical protein | |||
| 3262 | M | M1.Pdi30ORF18765P (100% identity) | CATCG | M1.Cdi08ORF3262P |
| 3263 | M | M2.CdiS122ORF3010P (100% identity) | CATCG | M2.Cdi08ORF3262P |
| 3264 | 521 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 2146 | DNA-binding transcriptional activator HyfR | |||
| 2147 | R | Pdi30McrCP (100% identity) | Cdi08McrCP | |
| 2148 | R | Pdi30McrBP (100% identity) | Cdi08McrBP | |
| 2149 | 240 aa hypothetical protein | |||