Escherichia coli KA0011 |
| [index] - [schematics] - [save as Word doc] |
|
|
|
Putative Escherichia coli KA0011 RM systems
Ref: Nomoto,R. et al. unpublished
REBASE ref # 38213
| Sequence length: | GenBank #: | |
| Chromosome: | 5,118,800 bp | AP029163 |
| plasmid pKA0011-1: | 81,994 bp | AP029164 |
REBASE acronym: EcoA0011
Org_num: 75253
All begin KA0011_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 39670 | 388 aa hypothetical protein | |||
| 39680 | M | M.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | M.EcoA0011ORF39680P |
| 39690 | S | S.Ecou021ORF19870P (100% identity) | RTACNNNNGTG | S.EcoA0011ORF39680P |
| 39700 | R | Ecou021ORF19870P (100% identity) | RTACNNNNGTG | EcoA0011ORF39680P |
| 39710 | toxic peptide regulated by antisense sRNA symR | |||
| plasmid pKA0011-1 | ||||
| 48940 | transposase | |||
| 48950 | M | M.EcoSEC14ORF22665P (99% identity) | M.EcoA0011ORF48950P | |
| 48960 | 73 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 4490 | 59 aa hypothetical protein | |||
| 4500 | M | M.PmeBin470ORFAP (100% identity) | ATGCAT | M.EcoA0011ORF4500P |
| 4510 | global DNA-binding transcriptional dual | |||
| 18180 | HD superfamily phosphohydrolase | |||
| 18190 | M | M.EcosS9DcmP (100% identity) | CCWGG | M.EcoA0011DcmP |
| 18200 | V | V.SflC32DcmP (74% identity) | CCWGG | V.EcoA0011DcmP |
| 18210 | amino acid exporter for phenylalanine | |||
| 25510 | RpoS stabilzer during Mg starvation | |||
| 25520 | M | M.EcosS9ORF10680P (100% identity) | A | M.EcoA0011ORF25520P |
| 25530 | 65 aa hypothetical protein | |||
| 29940 | regulator for DicB | |||
| 29950 | M | M.KpnYN1ORFGP (89% identity) | M.EcoA0011ORF29950P | |
| 29960 | 71 aa hypothetical protein | |||
| 40380 | mcrBC 5-methylcytosine restriction system | |||
| 40390 | R | EcosS9ORF2810P (100% identity) | GGTCTC | EcoA0011ORF40400P |
| 40400 | M | M2.EcosS9ORF2810P (100% identity) | GGTCTC | M1.EcoA0011ORF40400P |
| 40410 | M | M1.EcosS9ORF2810P (100% identity) | GGTCTC | M2.EcoA0011ORF40400P |
| 40420 | transposase | |||
| 42430 | 117 aa hypothetical protein | |||
| 42440 | R | SflFF80ORF21000P (100% identity) | YGGCCR | EcoA0011ORF42450P |
| ??? | M | M.SflFF80ORF21000P (100% identity) | YGGCCR | M.EcoA0011ORF42450P |
| 42460 | 32 aa hypothetical protein | |||
| 45830 | replication protein | |||
| 45840 | M | M1.Eco81009ORF318P (100% identity) | M.EcoA0011ORF45840P | |
| 45850 | 106 aa hypothetical protein | |||
| plasmid pKA0011-1 | ||||
| 48820 | 73 aa hypothetical protein | |||
| 48830 | M | M.UbapRSB107ORFAP (100% identity) | SAY | M.EcoA0011ORF48830P |
| 48840 | 308 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 39660 | 95 aa hypothetical protein | |||
| 39670 | R | Ecou021MrrP (100% identity) | EcoA0011MrrP | |
| 39680 | type I restriction-modification enzyme M | |||
| 40360 | IS911 transposase | |||
| 40370 | R | EcosS3McrBP (96% identity) | EcoA0011McrBP | |
| 40380 | R | EcosS9McrCP (100% identity) | EcoA0011McrCP | |
| 40390 | restriction endonuclease | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 45850 | 106 aa hypothetical protein | |||
| 45860 | M | M2.Eco81009ORF318P (99% identity) | M.EcoA0011ORF45860P | |
| 45870 | 70 aa hypothetical protein | |||