Cyanobacterium species Dongsha4 |
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Putative Cyanobacterium species Dongsha4 RM systems
Ref: Lin,Y.-C. et al. unpublished
REBASE ref # 38246
| Sequence length: | GenBank #: | |
| Chromosome: | 4,250,085 bp | CP084098 |
| plasmid pDongsha4b: | 20,643 bp | CP084100 |
REBASE acronym: Cspa4
Org_num: 75328
All begin Dongsha4_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 15355 | type V CRISPR-associated protein Cas12k | |||
| 15360 | R | Cspa4ORF135P (60% identity) | Cspa4ORF15390P | |
| 15365 | DUF433 domain-containing protein | |||
| 15370 | S | S.TsyCad16ORFM1P (25% identity) | S.Cspa4ORF15390P | |
| 15375 | YgiT-type zinc finger protein | |||
| 15380 | DUF5615 family PIN-like protein | |||
| 15385 | DUF433 domain-containing protein | |||
| 15390 | M | M.Cspa4ORF135P (97% identity) | M.Cspa4ORF15390P | |
| 15395 | winged helix-turn-helix domain-containing | |||
| plasmid pDongsha4b | ||||
| 18795 | 398 aa hypothetical protein | |||
| 18800 | M | M.Ssp7003ORF14610P (87% identity) | M.Cspa4ORF18800P | |
| 18805 | nucleotidyltransferase domain-containing | |||
| 18810 | HEPN domain-containing protein | |||
| 18725 | S | S.CfiYT5ORF6550P (37% identity) | S.Cspa4ORF18800P | |
| 18730 | 73 aa hypothetical protein | |||
| 18735 | DUF4926 domain-containing protein | |||
| 18740 | 74 aa hypothetical protein | |||
| 18745 | 82 aa hypothetical protein | |||
| 18750 | R | CstHL69ORFJP (82% identity) | Cspa4ORF18800P | |
| 18755 | 77 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 530 | plastocyanin | |||
| 540 | M | M.Gsp3708ORF110P (91% identity) | M.Cspa4ORF540P | |
| 545 | R | Gsp3708ORF110P (84% identity) | Cspa4ORF540P | |
| 550 | glutamate synthase large subunit | |||
| 1535 | TIGR03960 family B12-binding radical SAM | |||
| 1540 | M | M.Tbo703ORF20080P (48% identity) | M.Cspa4ORF1540P | |
| 1545 | R | Csp4105ORF79440P (64% identity) | Cspa4ORF1540P | |
| 1550 | acetyl-CoA carboxylase biotin carboxylase | |||
| 2595 | chemotaxis protein CheW | |||
| 2600 | M | M.RbaC02ORF975P (48% identity) | M.Cspa4ORF2600P | |
| 2605 | transcription-repair coupling factor | |||
| 3255 | BsaWI family type II restriction enzyme | |||
| 3260 | M | M.Gsp3708ORF769P (85% identity) | M.Cspa4ORF3260P | |
| 3265 | AAA family ATPase | |||
| 3635 | cupin domain-containing protein | |||
| 3640 | M | M1.Cap8ORF15560P (92% identity) | M1.Cspa4ORF3640P | |
| 3645 | type II toxin-antitoxin system VapC family | |||
| 3650 | DUF2281 domain-containing protein | |||
| 3655 | R | Cap1201ORF2995P (91% identity) | Cspa4ORF3640P | |
| 3660 | M | M.Cap1201ORF4370P (91% identity) | M2.Cspa4ORF3640P | |
| 3665 | thermonuclease family protein | |||
| 3710 | Ni/Fe hydrogenase subunit alpha | |||
| 3715 | RM | Cap10605ORF3474P (92% identity) | Cspa4ORF3715P | |
| 3720 | Uma2 family endonuclease | |||
| 3775 | 83 aa hypothetical protein | |||
| 3780 | R | Cap3222ORF17645P (92% identity) | Cspa4ORF3785P | |
| 3785 | M | M.Cap10605ORF1163P (98% identity) | M.Cspa4ORF3785P | |
| 3790 | DinB family protein | |||
| 4530 | 340 aa hypothetical protein | |||
| 4535 | M | M.Cap10605ORF1884P (87% identity) | M.Cspa4ORF4535P | |
| 4540 | 3-dehydroquinate synthase | |||
| 5370 | DUF1698 domain-containing protein | |||
| 5375 | M | M.Gsp3708ORF3319P (23% identity) | M.Cspa4ORF5375P | |
| 5380 | 114 aa hypothetical protein | |||
| 5435 | DUF262 domain-containing HNH endonuclease family | |||
| 5440 | RM | Cap8ORF4425P (80% identity) | Cspa4ORF5440P | |
| 5445 | shikimate dehydrogenase | |||
| 5915 | type II toxin-antitoxin system MqsA family | |||
| 5920 | R | Mru13258ORF1484P (72% identity) | Cspa4ORF5925P | |
| 5925 | M | M.Mko45383ORF14875P (51% identity) | M.Cspa4ORF5925P | |
| 5930 | 56 aa hypothetical protein | |||
| 6365 | DNA mismatch repair protein MutS | |||
| 6370 | M | M.Cap1201ORF4185P (99% identity) | M.Cspa4ORF6370P | |
| 6375 | R | Cap1201ORF4185P (96% identity) | Cspa4ORF6370P | |
| 6550 | MerR family transcriptional regulator | |||
| 6555 | M | M.Bca13669ORFMP (69% identity) | M.Cspa4ORF6555P | |
| 6560 | S | S.Bca13669ORFMP (51% identity) | S.Cspa4ORF6555P | |
| 6565 | DNA binding domain-containing protein | |||
| 6680 | prevent-host-death protein | |||
| 6685 | R | Cap3222ORF11975P (94% identity) | Cspa4ORF6690P | |
| 6690 | M | M.Cap3222ORF11975P (89% identity) | M.Cspa4ORF6690P | |
| 6695 | VWA domain-containing protein | |||
| 7550 | 110 aa hypothetical protein | |||
| 7555 | M | M.Cap8ORF450P (88% identity) | M.Cspa4ORF7555P | |
| 7560 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate | |||
| 9155 | 71 aa hypothetical protein | |||
| 9160 | RM | Bsp10303ORFKP (48% identity) | Cspa4ORF9160P | |
| 9165 | 47 aa hypothetical protein | |||
| 10405 | EVE domain-containing protein | |||
| 10410 | R | Cap3221ORF3715P (92% identity) | Cspa4ORF10415P | |
| 10415 | M | M.Cap3221ORF3715P (96% identity) | M.Cspa4ORF10415P | |
| 10420 | GAF domain-containing protein | |||
| 13735 | ATP-dependent zinc metalloprotease FtsH2 | |||
| 13740 | RM | Cap8ORF3165P (64% identity) | Cspa4ORF13740P | |
| 13745 | ABC transporter permease | |||
| 14210 | endonuclease MutS2 | |||
| 14215 | RM | Cap3221ORF11780P (76% identity) | Cspa4ORF14215P | |
| 14220 | tyrosine--tRNA ligase | |||
| 17495 | DUF262 domain-containing protein | |||
| 17500 | RM | Cap1201ORF4095P (65% identity) | Cspa4ORF17500P | |
| 17505 | 72 aa hypothetical protein | |||