Pantoea agglomerans CFBP8774 |
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Putative Pantoea agglomerans CFBP8774 RM systems
Ref: Chesneau,G. et al. FEMS Microbiol Ecol 96 (12) (2020)
REBASE ref # 38300
| Sequence length: | GenBank #: | |
| Chromosome: | 4,331,596 bp | CP143407 |
| plasmid punamed3: | 149,927 bp | CP143405 |
| plasmid punamed4: | 116,764 bp | CP143409 |
REBASE acronym: Pag4
Org_num: 75581
All begin IFU02_
| Type II | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 6065 | SPOR domain-containing protein | |||
| 6070 | M | M.PagY03DamP (100% identity) | GATC | M.Pag4DamP |
| 6075 | ribulose-phosphate 3-epimerase | |||
| 7780 | phosphoadenosine phosphosulfate reductase family | |||
| 7785 | M | M.Pag21ORF15510P (98% identity) | M.Pag4ORF7785P | |
| 7790 | TraR/DksA C4-type zinc finger protein | |||
| 9130 | IS3 family transposase | |||
| 9135 | RM | Vga43942II (85% identity) | Pag4ORF9135P | |
| 9140 | S | S.PmuX2ORFHP (34% identity) | S.Pag4ORF9135P | |
| 9145 | integrase arm-type DNA-binding domain-containing | |||
| 12090 | Arc family DNA-binding protein | |||
| 12095 | M | M.PagSDcmP (99% identity) | CCWGG | M.Pag4DcmP |
| 12100 | V | V.PanGB1DcmP (100% identity) | V.Pag4DcmP | |
| 12105 | 91 aa hypothetical protein | |||
| 16250 | DUF1364 domain-containing protein | |||
| 16255 | M | M.Esp617ORF26580P (83% identity) | M.Pag4ORF16255P | |
| 16260 | DUF1367 family protein | |||
| 17130 | 61 aa hypothetical protein | |||
| 17135 | M | M.PagCB1ORF5865P (88% identity) | M.Pag4ORF17135P | |
| 17140 | 84 aa hypothetical protein | |||
| 17780 | phage portal protein | |||
| 17785 | R | PagPa58ORF3830P (97% identity) | Pag4ORF17790P | |
| 17790 | M | M.PagPa58ORF3830P (97% identity) | M1.Pag4ORF17790P | |
| 17795 | DinI-like family protein | |||
| 17800 | 61 aa hypothetical protein | |||
| 17805 | replication endonuclease | |||
| 17810 | 139 aa hypothetical protein | |||
| 17815 | M | M.Pag8241ORF410P (92% identity) | M2.Pag4ORF17790P | |
| 17820 | TraR/DksA family transcriptional regulator | |||
| 20015 | Dam family site-specific | |||
| 20020 | M | M.KoxNIH4ORF30305P (55% identity) | M.Pag4ORF20020P | |
| 20025 | replication endonuclease | |||
| 20780 | antitermination protein | |||
| 20785 | M | M.PagPa58ORF4520P (89% identity) | M.Pag4ORF20785P | |
| 20790 | recombination protein NinG | |||
| 20955 | 83 aa hypothetical protein | |||
| 20960 | M | M.Pag00ORF7555P (100% identity) | M.Pag4ORF20960P | |
| 20965 | site-specific integrase | |||
| 22855 | DUF6079 family protein | |||
| 22860 | M | M.KquPF9ORF22810P (78% identity) | M.Pag4ORF22860P | |
| 22865 | R | KquB4H16ORF23295P (98% identity) | Pag4ORF22860P | |
| 22870 | BREX-3 system phosphatase PglZ | |||
| plasmid punamed3 | ||||
| 3140 | enoyl-CoA hydratase/isomerase family protein | |||
| 3145 | M | M.Pag85ORF23595P (73% identity) | M.Pag4ORF3145P | |
| 3150 | IS5 family transposase | |||
| plasmid punamed4 | ||||
| 26295 | 78 aa hypothetical protein | |||
| 26300 | M | M.PagAR24ORF23075P (100% identity) | M.Pag4ORF26300P | |
| 26305 | 76 aa hypothetical protein | |||
| Orphan M | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 20010 | 74 aa hypothetical protein | |||
| 20015 | M | M.Pag124ORF10375P (84% identity) | M.Pag4ORF20015P | |
| 20020 | DNA cytosine methyltransferase | |||