Parabacteroides distasonis PC19 |
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Putative Parabacteroides distasonis PC19 RM systems
Ref: Lubin,J.B. et al. Cell Host Microbe (2023) In press
REBASE ref # 38110
Complete sequence: 5,333,972 bp
GenBank #: CP121163
REBASE acronym: PdiPC19
Org_num: 74235
All begin P8F78_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| 14765 | GIY-YIG nuclease family protein | |||
| 14770 | M | M.PdiPdIII (100% identity) | GGANNNNNNRTGC | M.PdiPC19ORF14770P |
| 14775 | AAA family ATPase | |||
| 14780 | S | S.PdiPdIII (98% identity) | GGANNNNNNRTGC | S.PdiPC19ORF14770P |
| 14785 | R | PdiS2PDORF3410P (100% identity) | GGANNNNNNRTGC | PdiPC19ORF14770P |
| 14790 | DUF6078 family protein | |||
| 14890 | helix-turn-helix transcriptional regulator | |||
| 14895 | R | Bfr526ORF9460P (98% identity) | PdiPC19ORF14900P | |
| 14900 | M | M.Bfr526ORF9460P (100% identity) | M.PdiPC19ORF14900P | |
| 14905 | S | S1.Bfr526ORF9460P (98% identity) | S1.PdiPC19ORF14900P | |
| 14910 | S | S2.Bfa513ORF12025P (32% identity) | S2.PdiPC19ORF14900P | |
| 14915 | IS4 family transposase | |||
| 14920 | restriction endonuclease subunit S | |||
| ??? | S | S3.Pvu201ORF22395P (65% identity) | S3.PdiPC19ORF14900P | |
| 14930 | S | S4.Pdi158ORF11995P (82% identity) | S4.PdiPC19ORF14900P | |
| 14935 | S | S5.Pdi158ORF11995P (61% identity) | S5.PdiPC19ORF14900P | |
| 14940 | 134 aa hypothetical protein | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 10290 | Rpn family recombination-promoting | |||
| 10295 | M | M.PdiPdORF16120P (100% identity) | CGCG | M.PdiPC19ORF10295P |
| 10300 | fructose-6-phosphate aldolase | |||
| 11905 | PCMD domain-containing protein | |||
| 11910 | R | PspCT06IIP (100% identity) | CCWGG | PdiPC19ORF11920P |
| 11915 | helix-turn-helix domain-containing protein | |||
| 11920 | M | M.PspCT06II (100% identity) | CCWGG | M.PdiPC19ORF11920P |
| 11925 | DUF6383 domain-containing protein | |||
| 15185 | S-adenosylmethionine decarboxylase | |||
| 15190 | M | M.PdiGP102ORF12690P (92% identity) | M.PdiPC19ORF15190P | |
| 15195 | 121 aa hypothetical protein | |||
| 18910 | helix-turn-helix domain-containing protein | |||
| 18915 | RM | PdiPdORF2025P (100% identity) | PdiPC19ORF18915P | |
| 18920 | diphosphate--fructose-6-phosphate | |||
| 20180 | DUF3872 domain-containing protein | |||
| 20185 | M | M.PspCT06ORF10420P (100% identity) | M.PdiPC19ORF20185P | |
| 20190 | conjugal transfer protein TraO | |||
| 20530 | TIR domain-containing protein | |||
| 20535 | R | PspCT06IP (100% identity) | CTGCAG | PdiPC19ORF20540P |
| 20540 | M | M.PspCT06I (100% identity) | CTGCAG | M.PdiPC19ORF20540P |
| 20545 | helix-turn-helix domain-containing protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| 22005 | MobV family relaxase | |||
| 22010 | R | PdiPdMcrBP (100% identity) | PdiPC19McrBP | |
| 22015 | R | PdiPdMcrCP (99% identity) | PdiPC19McrCP | |
| 22020 | type II toxin-antitoxin system RelE/ParE family | |||