Escherichia coli L9 |
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Putative Escherichia coli L9 RM systems
Ref: Zhang,L. et al. unpublished
REBASE ref # 38138
| Sequence length: | GenBank #: | |
| Chromosome: | 4,674,053 bp | CP142044 |
| plasmid pL9-1: | 133,989 bp | CP142045 |
| plasmid pL9-2: | 113,748 bp | CP142046 |
REBASE acronym: EcoL9
Org_num: 74061
All begin VPJ62_
| Type I | ||||
|---|---|---|---|---|
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19960 | restriction endonuclease | |||
| 19965 | M | M.SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | M.EcoL9ORF19965P |
| 19970 | S | S.SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | S.EcoL9ORF19965P |
| 19975 | R | SflSTLE3ORF19325P (100% identity) | AGCANNNNNNTGA | EcoL9ORF19965P |
| 19980 | endoribonuclease SymE | |||
| plasmid pL9-1 | ||||
| 23290 | type II toxin-antitoxin system Phd/YefM family | |||
| 23295 | M | M.EcoHBIII (100% identity) | GAYNNNNNRTGA | M.EcoL9ORF23295P |
| 23300 | S | S.EcoHBIII (100% identity) | GAYNNNNNRTGA | S.EcoL9ORF23295P |
| 23305 | R | EcoHBIIIP (99% identity) | GAYNNNNNRTGA | EcoL9ORF23295P |
| 23310 | 3-phosphatase | |||
| Type II | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 1650 | cell division protein DamX | |||
| 1655 | M | M.UbaC1152DamP (100% identity) | GATC | M.EcoL9DamP |
| 1660 | ribulose-phosphate 3-epimerase | |||
| 7135 | flagella biosynthesis regulator Flk | |||
| 7140 | M | M.Sen7113ORF20540P (100% identity) | M.EcoL9ORF7140P | |
| 7145 | Com family DNA-binding transcriptional | |||
| 9510 | phosphohydrolase | |||
| 9515 | M | M.SflLIN6DcmP (100% identity) | CCWGG | M.EcoL9DcmP |
| 9520 | V | V.SflFF64DcmP (100% identity) | CCWGG | V.EcoL9DcmP |
| 9525 | drug/metabolite exporter YedA | |||
| 18385 | DUF1317 family protein | |||
| 18390 | M | M.Sbo812ORFAP (100% identity) | GATC | M.EcoL9ORF18390P |
| 18395 | cell division protein ZapA | |||
| plasmid pL9-1 | ||||
| 23395 | RNA-guided endonuclease TnpB family protein | |||
| 23400 | M | M.EcoHBORF26245P (100% identity) | M.EcoL9ORF23400P | |
| 23405 | recombination-associated protein RdgC | |||
| plasmid pL9-2 | ||||
| 24450 | 73 aa hypothetical protein | |||
| 24455 | M | M.Xca80ORFEP (100% identity) | M.EcoL9ORF24455P | |
| 24460 | 97 aa hypothetical protein | |||
| Type IV | ||||
| ORF | Gene | Most similar | Specificity | Name |
| Chromosome | ||||
| 19955 | BrnT family toxin | |||
| 19960 | R | SflSTLE3MrrP (100% identity) | EcoL9MrrP | |
| 19965 | class I SAM-dependent DNA methyltransferase | |||